- -

Evaluation of the porcine ACSL4 gene as a candidate gene for meat quality traits in pigs

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Evaluation of the porcine ACSL4 gene as a candidate gene for meat quality traits in pigs

Mostrar el registro completo del ítem

Corominas, J.; Ramayo-Caldas, Y.; Castelló, A.; Muñoz, M.; Ibáñez-Escriche, N.; Folch, JM.; Ballester, M. (2012). Evaluation of the porcine ACSL4 gene as a candidate gene for meat quality traits in pigs. Animal Genetics. 43(6):714-720. https://doi.org/10.1111/j.1365-2052.2012.02335.x

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/138903

Ficheros en el ítem

Metadatos del ítem

Título: Evaluation of the porcine ACSL4 gene as a candidate gene for meat quality traits in pigs
Autor: Corominas, J. Ramayo-Caldas, Y. Castelló, A. Muñoz, M. Ibáñez-Escriche, Noelia Folch, J. M. Ballester, M.
Entidad UPV: Universitat Politècnica de València. Departamento de Ciencia Animal - Departament de Ciència Animal
Fecha difusión:
Resumen:
[EN] Long-chain acyl-CoA synthetase (ACSL) family members catalyse the formation of long-chain acyl-CoA from fatty acid, ATP and CoA, thus playing an important role in both de novo lipid synthesis and fatty acid catabolism. ...[+]
Palabras clave: ACSL4 , Fatty acid metabolism , Genome-wide association study , Ss-oxidation
Derechos de uso: Cerrado
Fuente:
Animal Genetics. (issn: 0268-9146 )
DOI: 10.1111/j.1365-2052.2012.02335.x
Editorial:
Blackwell Publishing
Versión del editor: https://doi.org/10.1111/j.1365-2052.2012.02335.x
Código del Proyecto:
info:eu-repo/grantAgreement/MECD//AP2008-01450/ES/AP2008-01450/
info:eu-repo/grantAgreement/MICINN//AGL2008-04818-C03-02/ES/GENES CANDIDATOS E IDENTIFICACION GENOMICA DE LOCI Y RUTAS GENETICAS QUE AFECTAN A LA CALIDAD DE LA CARNE EN CERDOS/
info:eu-repo/grantAgreement/MICINN//AGL2008-04818-C03-03/ES/GENES CANDIDATOS E IDENTIFICACION GENOMICA DE LOCI Y RUTAS GENICAS QUE AFECTAN A LA CALIDAD DE LA CARNE EN CERDOS/
info:eu-repo/grantAgreement/MICINN//AGL2008-04818-C03-01/ES/GENES CANDIDATOS E IDENTIFICACION GENOMICA DE LOCI Y RUTAS GENETICAS QUE AFECTAN A LA CALIDAD DE LA CARNE EN CERDOS/
info:eu-repo/grantAgreement/MICINN//BES-2009-018223-2/ES/BES-2009-018223-2/
Agradecimientos:
We would like to thank Dr. Jordi Estelle for help in the association studies for SSCX SNPs and Dr. Anna Mercade for the genotyping of porcine chip. This study has been funded by MICINN project (AGL2008-04818-C03). J. ...[+]
Tipo: Artículo

References

Cao, Y., Traer, E., Zimmerman, G. A., McIntyre, T. M., & Prescott, S. M. (1998). Cloning, Expression, and Chromosomal Localization of Human Long-Chain Fatty Acid-CoA Ligase 4 (FACL4). Genomics, 49(2), 327-330. doi:10.1006/geno.1998.5268

Cartharius, K., Frech, K., Grote, K., Klocke, B., Haltmeier, M., Klingenhoff, A., … Werner, T. (2005). MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics, 21(13), 2933-2942. doi:10.1093/bioinformatics/bti473

Čepica, S., Masopust, M., Knoll, A., Bartenschlager, H., Yerle, M., Rohrer, G. A., & Geldermann, H. (2006). Linkage and RH mapping of 10 genes to a QTL region for fatness and muscling traits on pig chromosome X. Animal Genetics, 37(6), 603-604. doi:10.1111/j.1365-2052.2006.01536.x [+]
Cao, Y., Traer, E., Zimmerman, G. A., McIntyre, T. M., & Prescott, S. M. (1998). Cloning, Expression, and Chromosomal Localization of Human Long-Chain Fatty Acid-CoA Ligase 4 (FACL4). Genomics, 49(2), 327-330. doi:10.1006/geno.1998.5268

Cartharius, K., Frech, K., Grote, K., Klocke, B., Haltmeier, M., Klingenhoff, A., … Werner, T. (2005). MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics, 21(13), 2933-2942. doi:10.1093/bioinformatics/bti473

Čepica, S., Masopust, M., Knoll, A., Bartenschlager, H., Yerle, M., Rohrer, G. A., & Geldermann, H. (2006). Linkage and RH mapping of 10 genes to a QTL region for fatness and muscling traits on pig chromosome X. Animal Genetics, 37(6), 603-604. doi:10.1111/j.1365-2052.2006.01536.x

Čepica, S., Bartenschlager, H., & Geldermann, H. (2007). Mapping of QTL on chromosome X for fat deposition, muscling and growth traits in a wild boar × Meishan F2 family using a high-density gene map. Animal Genetics, 38(6), 634-638. doi:10.1111/j.1365-2052.2007.01661.x

Duthie, C.-A., Simm, G., Pérez-Enciso, M., Doeschl-Wilson, A., Kalm, E., Knap, P. W., & Roehe, R. (2009). Genomic scan for quantitative trait loci of chemical and physical body composition and deposition on pig chromosome X including the pseudoautosomal region of males. Genetics Selection Evolution, 41(1), 27. doi:10.1186/1297-9686-41-27

Erkens, T., Van Poucke, M., Vandesompele, J., Goossens, K., Van Zeveren, A., & Peelman, L. J. (2006). BMC Biotechnology, 6(1), 41. doi:10.1186/1472-6750-6-41

Harlizius, B., Rattink, A. P., de Koning, D. J., Faivre, M., Joosten, R. G., van Arendonk, J. A. M., & Groenen, M. A. M. (2000). The X Chromosome harbors quantitative trait loci for backfat thickness and intramuscular fat content in pigs. Mammalian Genome, 11(9), 800-802. doi:10.1007/s003350010147

Horton, J. D., Shah, N. A., Warrington, J. A., Anderson, N. N., Park, S. W., Brown, M. S., & Goldstein, J. L. (2003). Combined analysis of oligonucleotide microarray data from transgenic and knockout mice identifies direct SREBP target genes. Proceedings of the National Academy of Sciences, 100(21), 12027-12032. doi:10.1073/pnas.1534923100

Kelly, D. P., Kim, J. J., Billadello, J. J., Hainline, B. E., Chu, T. W., & Strauss, A. W. (1987). Nucleotide sequence of medium-chain acyl-CoA dehydrogenase mRNA and its expression in enzyme-deficient human tissue. Proceedings of the National Academy of Sciences, 84(12), 4068-4072. doi:10.1073/pnas.84.12.4068

Livak, K. J., & Schmittgen, T. D. (2001). Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method. Methods, 25(4), 402-408. doi:10.1006/meth.2001.1262

Luo, J., Sladek, R., Carrier, J., Bader, J.-A., Richard, D., & Giguère, V. (2003). Reduced Fat Mass in Mice Lacking Orphan Nuclear Receptor Estrogen-Related Receptor α. Molecular and Cellular Biology, 23(22), 7947-7956. doi:10.1128/mcb.23.22.7947-7956.2003

Ma, J., Ren, J., Guo, Y., Duan, Y., Ding, N., Zhou, L., … Huang, L. (2009). Genome-wide identification of quantitative trait loci for carcass composition and meat quality in a large-scale White Duroc × Chinese Erhualian resource population. Animal Genetics, 40(5), 637-647. doi:10.1111/j.1365-2052.2009.01892.x

Mashek, D. G., Li, L. O., & Coleman, R. A. (2006). Rat long-chain acyl-CoA synthetase mRNA, protein, and activity vary in tissue distribution and in response to diet. Journal of Lipid Research, 47(9), 2004-2010. doi:10.1194/jlr.m600150-jlr200

Mercade, A., Sanchez, A., & Folch, J. M. (2005). Assignment of theacyl-CoA synthetase long-chain family member 4 (ACSL4)gene to porcine chromosome X. Animal Genetics, 36(1), 76-76. doi:10.1111/j.1365-2052.2004.01222.x

Mercade, A., Estelle, J., Perez-Enciso, M., Varona, L., Silio, L., Noguera, J. L., … Folch, J. M. (2006). Characterization of the porcine acyl-CoA synthetase long-chain 4 gene and its association with growth and meat quality traits. Animal Genetics, 37(3), 219-224. doi:10.1111/j.1365-2052.2006.01436.x

Minekura, H., Kang, M.-J., Inagaki, Y., Cho, Y.-Y., Suzuki, H., Fujino, T., & Yamamoto, T. T. (2001). Exon/Intron Organization and Transcription Units of the Human Acyl-CoA Synthetase 4 Gene. Biochemical and Biophysical Research Communications, 286(1), 80-86. doi:10.1006/bbrc.2001.5357

Nygard, A.-B., Jørgensen, C. B., Cirera, S., & Fredholm, M. (2007). Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR. BMC Molecular Biology, 8(1), 67. doi:10.1186/1471-2199-8-67

Øvergård, A.-C., Nerland, A., & Patel, S. (2010). Evaluation of potential reference genes for real time RT-PCR studies in Atlantic halibut (Hippoglossus Hippoglossus L.); during development, in tissues of healthy and NNV-injected fish, and in anterior kidney leucocytes. BMC Molecular Biology, 11(1), 36. doi:10.1186/1471-2199-11-36

Perez-Enciso, M., & Misztal, I. (2004). Qxpak: a versatile mixed model application for genetical genomics and QTL analyses. Bioinformatics, 20(16), 2792-2798. doi:10.1093/bioinformatics/bth331

Pérez-Enciso, M., & Misztal, I. (2011). Qxpak.5: Old mixed model solutions for new genomics problems. BMC Bioinformatics, 12(1). doi:10.1186/1471-2105-12-202

Pérez-Enciso, M., Clop, A., Noguera, J. L., Ovilo, C., Coll, A., Folch, J. M., … Sánchez, A. (2000). A QTL on pig chromosome 4 affects fatty acid metabolism: evidence from an Iberian by Landrace intercross. Journal of Animal Science, 78(10), 2525. doi:10.2527/2000.78102525x

Pérez-Enciso, M., Mercadé, A., Bidanel, J. P., Geldermann, H., Cepica, S., Bartenschlager, H., … Folch, J. M. (2005). Large-scale, multibreed, multitrait analyses of quantitative trait loci experiments: The case of porcine X chromosome1. Journal of Animal Science, 83(10), 2289-2296. doi:10.2527/2005.83102289x

Piccini, M., Vitelli, F., Bruttini, M., Pober, B. R., Jonsson, J. J., Villanova, M., … Renieri, A. (1998). FACL4, a New Gene Encoding Long-Chain Acyl-CoA Synthetase 4, Is Deleted in a Family with Alport Syndrome, Elliptocytosis, and Mental Retardation. Genomics, 47(3), 350-358. doi:10.1006/geno.1997.5104

Schneiter, R., & Kohlwein, S. D. (1997). Organelle Structure, Function, and Inheritance in Yeast: A Role for Fatty Acid Synthesis? Cell, 88(4), 431-434. doi:10.1016/s0092-8674(00)81882-6

Sladek, R., Bader, J. A., & Giguère, V. (1997). The orphan nuclear receptor estrogen-related receptor alpha is a transcriptional regulator of the human medium-chain acyl coenzyme A dehydrogenase gene. Molecular and Cellular Biology, 17(9), 5400-5409. doi:10.1128/mcb.17.9.5400

Soupene, E., & Kuypers, F. A. (2008). Mammalian Long-Chain Acyl-CoA Synthetases. Experimental Biology and Medicine, 233(5), 507-521. doi:10.3181/0710-mr-287

Storey, J. D., & Tibshirani, R. (2003). Statistical significance for genomewide studies. Proceedings of the National Academy of Sciences, 100(16), 9440-9445. doi:10.1073/pnas.1530509100

Van Horn, C. G., Caviglia, J. M., Li, L. O., Wang, S., Granger, D. A., & Coleman, R. A. (2005). Characterization of Recombinant Long-Chain Rat Acyl-CoA Synthetase Isoforms 3 and 6:  Identification of a Novel Variant of Isoform 6. Biochemistry, 44(5), 1635-1642. doi:10.1021/bi047721l

[-]

recommendations

 

Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro completo del ítem