- -

Genome-wide association study for intramuscular fatty acid composition in an Iberian x Landrace cross

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Genome-wide association study for intramuscular fatty acid composition in an Iberian x Landrace cross

Mostrar el registro completo del ítem

Ramayo-Caldas, Y.; Mercadé, A.; Castelló, A.; Yang, B.; Rodríguez, C.; Alves, E.; Díaz, I.... (2012). Genome-wide association study for intramuscular fatty acid composition in an Iberian x Landrace cross. Journal of Animal Science. 90(9):2883-2893. https://doi.org/10.2527/jas.2011-4900

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/138963

Ficheros en el ítem

Metadatos del ítem

Título: Genome-wide association study for intramuscular fatty acid composition in an Iberian x Landrace cross
Autor: Ramayo-Caldas, Y. Mercadé, A. Castelló, A. Yang, B. Rodríguez, C. Alves, E. Díaz, I. Ibáñez-Escriche, Noelia Noguera, J. L. Pérez-Enciso, M. Fernández, A. I. Folch, J. M.
Entidad UPV: Universitat Politècnica de València. Departamento de Ciencia Animal - Departament de Ciència Animal
Fecha difusión:
Resumen:
[EN] The lipid content and fatty acid (FA) profile have an important impact in human health as well as in the technological transformation and nutritional and organoleptic quality of meat. A genome-wide association study ...[+]
Palabras clave: Candidate gene , Fatty acid , Genome-wide association study , Intramuscular fat , Meat quality
Derechos de uso: Cerrado
Fuente:
Journal of Animal Science. (issn: 0021-8812 )
DOI: 10.2527/jas.2011-4900
Editorial:
American Society of Animal Science
Versión del editor: https://doi.org/10.2527/jas.2011-4900
Código del Proyecto:
info:eu-repo/grantAgreement/MICINN//AGL2008-04818-C03-03/ES/GENES CANDIDATOS E IDENTIFICACION GENOMICA DE LOCI Y RUTAS GENICAS QUE AFECTAN A LA CALIDAD DE LA CARNE EN CERDOS/
info:eu-repo/grantAgreement/MICINN//AGL2008-04818-C03-02/ES/GENES CANDIDATOS E IDENTIFICACION GENOMICA DE LOCI Y RUTAS GENETICAS QUE AFECTAN A LA CALIDAD DE LA CARNE EN CERDOS/
info:eu-repo/grantAgreement/MECD//AP2008-01450/ES/AP2008-01450/
info:eu-repo/grantAgreement/MICINN//AGL2008-04818-C03-01/ES/GENES CANDIDATOS E IDENTIFICACION GENOMICA DE LOCI Y RUTAS GENETICAS QUE AFECTAN A LA CALIDAD DE LA CARNE EN CERDOS/
info:eu-repo/grantAgreement/MEC//CSD2007-00036/ES/Centro de Genómica Básica y de orientación Agroalimentaria/
Agradecimientos:
This work was funded by MICINN Project AGL2008-04818-C03/GAN (Spanish Ministry of Science) and by the Innovation Consolider-Ingenio 2010 Program (CSD2007-00036, Centre for Research in Agrigenomics). We are indebted to Nova ...[+]
Tipo: Artículo

References

Amills, M., Vidal, O., Varona, L., Tomàs, A., Gil, M., Sànchez, A., & Noguera, J. L. (2005). Polymorphism of the pig 2,4-dienoyl CoA reductase 1 gene (DECR1) and its association with carcass and meat quality traits1. Journal of Animal Science, 83(3), 493-498. doi:10.2527/2005.833493x

Casellas, J., Noguera, J. L., Reixach, J., Díaz, I., Amills, M., & Quintanilla, R. (2010). Bayes factor analyses of heritability for serum and muscle lipid traits in Duroc pigs1. Journal of Animal Science, 88(7), 2246-2254. doi:10.2527/jas.2009-2205

Chuang, S. S., Helvig, C., Taimi, M., Ramshaw, H. A., Collop, A. H., Amad, M., … Korczak, B. (2003). CYP2U1, a Novel Human Thymus- and Brain-specific Cytochrome P450, Catalyzes ω- and (ω-1)-Hydroxylation of Fatty Acids. Journal of Biological Chemistry, 279(8), 6305-6314. doi:10.1074/jbc.m311830200 [+]
Amills, M., Vidal, O., Varona, L., Tomàs, A., Gil, M., Sànchez, A., & Noguera, J. L. (2005). Polymorphism of the pig 2,4-dienoyl CoA reductase 1 gene (DECR1) and its association with carcass and meat quality traits1. Journal of Animal Science, 83(3), 493-498. doi:10.2527/2005.833493x

Casellas, J., Noguera, J. L., Reixach, J., Díaz, I., Amills, M., & Quintanilla, R. (2010). Bayes factor analyses of heritability for serum and muscle lipid traits in Duroc pigs1. Journal of Animal Science, 88(7), 2246-2254. doi:10.2527/jas.2009-2205

Chuang, S. S., Helvig, C., Taimi, M., Ramshaw, H. A., Collop, A. H., Amad, M., … Korczak, B. (2003). CYP2U1, a Novel Human Thymus- and Brain-specific Cytochrome P450, Catalyzes ω- and (ω-1)-Hydroxylation of Fatty Acids. Journal of Biological Chemistry, 279(8), 6305-6314. doi:10.1074/jbc.m311830200

Clop, A., Ovilo, C., Perez-Enciso, M., Cercos, A., Tomas, A., Fernandez, A., … Noguera, J. L. (2003). Detection of QTL affecting fatty acid composition in the pig. Mammalian Genome, 14(9), 650-656. doi:10.1007/s00335-002-2210-7

Corella, D. (2009). APOA2, Dietary Fat, and Body Mass Index. Archives of Internal Medicine, 169(20), 1897. doi:10.1001/archinternmed.2009.343

Estellé, J., Fernández, A. I., Pérez-Enciso, M., Fernández, A., Rodríguez, C., Sánchez, A., … Folch, J. M. (2009). A non-synonymous mutation in a conserved site of theMTTPgene is strongly associated with protein activity and fatty acid profile in pigs. Animal Genetics, 40(6), 813-820. doi:10.1111/j.1365-2052.2009.01922.x

Estellé, J., Pérez-Enciso, M., Mercadé, A., Varona, L., Alves, E., Sánchez, A., & Folch, J. M. (2006). Characterization of the porcine FABP5 gene and its association with the FAT1 QTL in an Iberian by Landrace cross. Animal Genetics, 37(6), 589-591. doi:10.1111/j.1365-2052.2006.01535.x

Flicek, P., Amode, M. R., Barrell, D., Beal, K., Brent, S., Chen, Y., … Fitzgerald, S. (2010). Ensembl 2011. Nucleic Acids Research, 39(Database), D800-D806. doi:10.1093/nar/gkq1064

Gallardo, D., Pena, R. N., Amills, M., Varona, L., Ramírez, O., Reixach, J., … Quintanilla, R. (2008). Mapping of quantitative trait loci for cholesterol, LDL, HDL, and triglyceride serum concentrations in pigs. Physiological Genomics, 35(3), 199-209. doi:10.1152/physiolgenomics.90249.2008

Grindflek, E., Szyda, J., Liu, Z., & Lien, S. (2001). Detection of quantitative trait loci for meat quality in a commercial slaughter pig cross. Mammalian Genome, 12(4), 299-304. doi:10.1007/s003350010278

Guo, T., Ren, J., Yang, K., Ma, J., Zhang, Z., & Huang, L. (2009). Quantitative trait loci for fatty acid composition in longissimus dorsi and abdominal fat: results from a White Duroc × Erhualian intercross F2population. Animal Genetics, 40(2), 185-191. doi:10.1111/j.1365-2052.2008.01819.x

Henderson, C. R. (1975). Best Linear Unbiased Estimation and Prediction under a Selection Model. Biometrics, 31(2), 423. doi:10.2307/2529430

Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2008). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols, 4(1), 44-57. doi:10.1038/nprot.2008.211

Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2008). Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Research, 37(1), 1-13. doi:10.1093/nar/gkn923

Ledur, M. C., Navarro, N., & Pérez-Enciso, M. (2009). Large-scale SNP genotyping in crosses between outbred lines: how useful is it? Heredity, 105(2), 173-182. doi:10.1038/hdy.2009.149

Mach, N., Devant, M., Díaz, I., Font-Furnols, M., Oliver, M. A., García, J. A., & Bach, A. (2006). Increasing the amount of n-3 fatty acid in meat from young Holstein bulls through nutrition1. Journal of Animal Science, 84(11), 3039-3048. doi:10.2527/jas.2005-632

Malek, M., Dekkers, J. C. M., Lee, H. K., Baas, T. J., Prusa, K., Huff-Lonergan, E., & Rothschild, M. F. (2001). A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig. II. Meat and muscle composition. Mammalian Genome, 12(8), 637-645. doi:10.1007/s003350020019

Murakami, M., Taketomi, Y., Miki, Y., Sato, H., Hirabayashi, T., & Yamamoto, K. (2011). Recent progress in phospholipase A2 research: From cells to animals to humans. Progress in Lipid Research, 50(2), 152-192. doi:10.1016/j.plipres.2010.12.001

Nii, M., Hayashi, T., Tani, F., Niki, A., Mori, N., Fujishima-Kanaya, N., … Mikawa, S. (2006). Quantitative trait loci mapping for fatty acid composition traits in perirenal and back fat using a Japanese wild boar × Large White intercross. Animal Genetics, 37(4), 342-347. doi:10.1111/j.1365-2052.2006.01485.x

Ntawubizi, M., Colman, E., Janssens, S., Raes, K., Buys, N., & De Smet, S. (2010). Genetic parameters for intramuscular fatty acid composition and metabolism in pigs1. Journal of Animal Science, 88(4), 1286-1294. doi:10.2527/jas.2009-2355

Ojeda, A., Estellé, J., Folch, J. M., & Pérez-Enciso, M. (2008). Nucleotide variability and linkage disequilibrium patterns at the porcineFABP5gene. Animal Genetics, 39(5), 468-473. doi:10.1111/j.1365-2052.2008.01752.x

Pérez-Enciso, M., Clop, A., Noguera, J. L., Ovilo, C., Coll, A., Folch, J. M., … Sánchez, A. (2000). A QTL on pig chromosome 4 affects fatty acid metabolism: evidence from an Iberian by Landrace intercross. Journal of Animal Science, 78(10), 2525. doi:10.2527/2000.78102525x

Pérez-Enciso, M., & Misztal, I. (2011). Qxpak.5: Old mixed model solutions for new genomics problems. BMC Bioinformatics, 12(1). doi:10.1186/1471-2105-12-202

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., … Sham, P. C. (2007). PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses. The American Journal of Human Genetics, 81(3), 559-575. doi:10.1086/519795

Quintanilla, R., Pena, R. N., Gallardo, D., Cánovas, A., Ramírez, O., Díaz, I., … Amills, M. (2011). Porcine intramuscular fat content and composition are regulated by quantitative trait loci with muscle-specific effects1. Journal of Animal Science, 89(10), 2963-2971. doi:10.2527/jas.2011-3974

Ramos, A. M., Crooijmans, R. P. M. A., Affara, N. A., Amaral, A. J., Archibald, A. L., Beever, J. E., … Groenen, M. A. M. (2009). Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology. PLoS ONE, 4(8), e6524. doi:10.1371/journal.pone.0006524

Safran, M., Dalah, I., Alexander, J., Rosen, N., Iny Stein, T., Shmoish, M., … Lancet, D. (2010). GeneCards Version 3: the human gene integrator. Database, 2010(0), baq020-baq020. doi:10.1093/database/baq020

Sanchez, M.-P., Iannuccelli, N., Basso, B., Bidanel, J.-P., Billon, Y., Gandemer, G., … Le Roy, P. (2007). Identification of QTL with effects on intramuscular fat content and fatty acid composition in a Duroc × Large White cross. BMC Genetics, 8(1), 55. doi:10.1186/1471-2156-8-55

Sellier, P., Maignel, L., & Bidanel, J. P. (2009). Genetic parameters for tissue and fatty acid composition of backfat, perirenal fat and longissimus muscle in Large White and Landrace pigs. animal, 4(4), 497-504. doi:10.1017/s1751731109991261

Storey, J. D., & Tibshirani, R. (2003). Statistical significance for genomewide studies. Proceedings of the National Academy of Sciences, 100(16), 9440-9445. doi:10.1073/pnas.1530509100

Uemoto, Y., Sato, S., Ohnishi, C., Terai, S., Komatsuda, A., & Kobayashi, E. (2009). The effects of single and epistatic quantitative trait loci for fatty acid composition in a Meishan × Duroc crossbred population. Journal of Animal Science, 87(11), 3470-3476. doi:10.2527/jas.2009-1917

VARONA, L., OVILO, C., CLOP, A., NOGUERA, J. L., PÉREZ-ENCISO, M., COLL, A., … SÁNCHEZ, A. (2002). QTL mapping for growth and carcass traits in an Iberian by Landrace pig intercross: additive, dominant and epistatic effects. Genetical Research, 80(2), 145-154. doi:10.1017/s0016672302005803

Warden, C. H., Daluiski, A., Bu, X., Purcell-Huynh, D. A., De Meester, C., Shieh, B. H., … Chen, Y. D. (1993). Evidence for linkage of the apolipoprotein A-II locus to plasma apolipoprotein A-II and free fatty acid levels in mice and humans. Proceedings of the National Academy of Sciences, 90(22), 10886-10890. doi:10.1073/pnas.90.22.10886

Watkins, P. A., Maiguel, D., Jia, Z., & Pevsner, J. (2007). Evidence for 26 distinct acyl-coenzyme A synthetase genes in the human genome. Journal of Lipid Research, 48(12), 2736-2750. doi:10.1194/jlr.m700378-jlr200

Wigginton, J. E., & Abecasis, G. R. (2005). PEDSTATS: descriptive statistics, graphics and quality assessment for gene mapping data. Bioinformatics, 21(16), 3445-3447. doi:10.1093/bioinformatics/bti529

Wong, R. H., & Sul, H. S. (2010). Insulin signaling in fatty acid and fat synthesis: a transcriptional perspective. Current Opinion in Pharmacology, 10(6), 684-691. doi:10.1016/j.coph.2010.08.004

Wood, J. D., Enser, M., Fisher, A. V., Nute, G. R., Sheard, P. R., Richardson, R. I., … Whittington, F. M. (2008). Fat deposition, fatty acid composition and meat quality: A review. Meat Science, 78(4), 343-358. doi:10.1016/j.meatsci.2007.07.019

Yang, B., Navarro, N., Noguera, J. L., Muñoz, M., Guo, T. F., Yang, K. X., … Pérez-Enciso, M. (2011). Building phenotype networks to improve QTL detection: a comparative analysis of fatty acid and fat traits in pigs. Journal of Animal Breeding and Genetics, 128(5), 329-343. doi:10.1111/j.1439-0388.2011.00928.x

Yang, K. X., Ma, J. W., Guo, Y. M., Guo, T. F., Zhao, Y. G., Ding, N. S., … Huang, L. S. (2010). Correlations between fat depot traits and fatty acid composition in abdominal subcutaneous adipose tissue and longissimus muscle: Results from a White Duroc × Erhualian intercross F2 population1. Journal of Animal Science, 88(11), 3538-3545. doi:10.2527/jas.2009-2602

[-]

recommendations

 

Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro completo del ítem