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Status and origin of Egyptian local rabbits in comparison with Spanish common rabbits using mitochondrial DNA sequence analysis

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Status and origin of Egyptian local rabbits in comparison with Spanish common rabbits using mitochondrial DNA sequence analysis

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Emam, AM.; Afonso, S.; González-Redondo, P.; Mehaisen, G.; Azoz, A.; Ahmed, N.; Fernand, N. (2020). Status and origin of Egyptian local rabbits in comparison with Spanish common rabbits using mitochondrial DNA sequence analysis. World Rabbit Science. 28(2):93-102. https://doi.org/10.4995/wrs.2020.12219

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Título: Status and origin of Egyptian local rabbits in comparison with Spanish common rabbits using mitochondrial DNA sequence analysis
Autor: Emam, Ahmed Mostafa Afonso, Sandra González-Redondo, Pedro Mehaisen, G.M.K. Azoz, A.A.A. Ahmed, N.A. Fernand, N.
Fecha difusión:
Resumen:
[EN] Mitochondrial DNA (mtDNA) and cytochrome b (cyt b) gene sequences were used to determine the status of genetic diversity and phylogeny for 132 individuals from local rabbit breeds in Egypt and Spain. The Egyptian local ...[+]
Palabras clave: Egyptian rabbits , Spanish common rabbit , Genetic diversity , Mitochondrial DNA
Derechos de uso: Reconocimiento - No comercial - Compartir igual (by-nc-sa)
Fuente:
World Rabbit Science. (issn: 1257-5011 ) (eissn: 1989-8886 )
DOI: 10.4995/wrs.2020.12219
Editorial:
Universitat Politècnica de València
Versión del editor: https://doi.org/10.4995/wrs.2020.12219
Tipo: Artículo

References

Abrantes J., Areal H., Esteves P.J. 2013. Insights into the European rabbit (Oryctolagus cuniculus) innate immune system: genetic diversity of the toll-like receptor 3(TLR3) in wild populations and domestic breeds. BMC Genet., 14: 73. https://doi.org/10.1186/1471-2156-14-73

Achilli A., Olivieri A., Pellecchia M., Uboldi C., Colli L., Al-Zahery N., Accetturo M., Pala M., Kashani B.H., Perego U.A., Battaglia V., Fornarino S., Kalamati J., Houshmand M., Negrini R., Semino O., Richards M., Macaulay V., Ferretti L., Bandelt H.J., Ajmone-Marsan P., Torroni A. 2008. Mitochondrial genomes of extinct aurochs survive in domestic cattle. Curr. Biol., 18: R157-R158. https://doi.org/10.1016/j.cub.2008.01.019

Alves J.M., Carneiro, M., Afonso S., Lopes S., Garreau H., Boucher S., Allian D., Queney G., Esteves P.J., Bolet J. and Ferrnand N. 2015. Levels and patterns of genetic diversity and population structure in domestic rabbits. PLoS One 10 (12): e0144687. https://doi.org/10.1371/journal.pone.0144687 [+]
Abrantes J., Areal H., Esteves P.J. 2013. Insights into the European rabbit (Oryctolagus cuniculus) innate immune system: genetic diversity of the toll-like receptor 3(TLR3) in wild populations and domestic breeds. BMC Genet., 14: 73. https://doi.org/10.1186/1471-2156-14-73

Achilli A., Olivieri A., Pellecchia M., Uboldi C., Colli L., Al-Zahery N., Accetturo M., Pala M., Kashani B.H., Perego U.A., Battaglia V., Fornarino S., Kalamati J., Houshmand M., Negrini R., Semino O., Richards M., Macaulay V., Ferretti L., Bandelt H.J., Ajmone-Marsan P., Torroni A. 2008. Mitochondrial genomes of extinct aurochs survive in domestic cattle. Curr. Biol., 18: R157-R158. https://doi.org/10.1016/j.cub.2008.01.019

Alves J.M., Carneiro, M., Afonso S., Lopes S., Garreau H., Boucher S., Allian D., Queney G., Esteves P.J., Bolet J. and Ferrnand N. 2015. Levels and patterns of genetic diversity and population structure in domestic rabbits. PLoS One 10 (12): e0144687. https://doi.org/10.1371/journal.pone.0144687

Bolet G., Brun J.M., Monnerot M., Abeni F., Arnal C., Arnold J., Bell D., Bergoglio G., Besenfelder U., Bosze S., Boucher S., Chanteloup N., Ducourouble M.C., Durand-Tardif M., Esteves P.J., Ferrand N., Gautier A., Haas C., Hewitt G., Jehl N., Joly T., Koehl P.F., Laube T., Lechevestrier S., Lopez M., Masoero G., Menigoz J.J., Piccinin R., Queney G., Saleil G., Surridge A., Van Der Loo W., Vicente J.S., Viudes De Castro M.P., Virag G., Zimmermann, J.M. 2000. Evaluation and conservation of European rabbit (Oryctolagus cuniculus) genetic resources. First results and inferences. In Proc.: 7th World Rabbit Congress, 4-7 July 2000, Valencia, Spain, pp. 281-315.

Bollback J.P., Huelsenbeck J.P. 2007. Clonal interference is alleviated by high mutation rates in large populations. Mol. Biol. Evol., 24: 1397-1406. https://doi.org/10.1093/molbev/msm056

Bortoluzzi C., Bosse M., Derks M.F.L., Crooijmans R., Groenen M.A.M, Megens H.J. 2019. The type of bottleneck matters: Insights into the deleterious variation landscape of small managed populations. Evol Appl., 13: 330-341. https://doi.org/10.1111/eva.12872.

Brook B.W. 2008. Demographics versus genetics in conservation biology. In: Carrol, S.P. and Fox, C.W. (eds). Conservation Biology: Evolution in Action. Oxford University Press: USA. 35-49.

Campos, R., Storz, J.F., Ferrand, N. 2012. Copy number polymorphism in the α-globin gene cluster of European rabbit (Oryctolagus cuniculus). Heredity, 108: 531-536. https://doi.org/10.1038/hdy.2011.118

Carneiro M., Afonso S., Geraldes A., Garreau H., Bolet G., Boucher S., Tircazes A., Queney G., Nachman M.W., Ferrand N. 2011. The genetic structure of domestic rabbits. Mol. Biol. Evol., 28: 1801-1816. https://doi.org/10.1093/molbev/msr003

Carneiro M., Albert F.W., Melo-Ferreira J., Galtier N., Gayral P., Blanco-Aguiar J.A., Villafuerte R., Nachman N.M., Ferrand N. 2012. Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome. Mol. Biol. Evol., 29: 1837-1849. https://doi.org/10.1093/molbev/mss025

Christensen N.D., Peng X. 2012. Rabbit genetic and transgenic model. In: The Laboratory Rabbit, Guinea pig, Hamster and other Rodents (Eds. Suckow, M.A., Stevens, K.A. and Wilson, R.P). Elsevier, USA, pp. 165-194. https://doi.org/10.1016/B978-0-12-380920-9.00007-9

Christodoulakis M., Golding G.B., Iliopoulos C.S., Pinzón Ardila Y.J., Smyth W.F. 2007. Efficient algorithms for counting and reporting segregating sites in genomic sequences. J. Comput. Biol., 14: 1001-1010. https://doi.org/10.1089/cmb.2006.0136

Emam A.M., Afonso, S., Azoz, A., Mehaisen, G.M.K., Gonzalez, P.; Ahmed, N.A., Ferrnand N. 2016. Microsatellite polymorphism in some Egyptian and Spanish common rabbit breeds. In Proc.: 11th World Rabbit Congress, 15-18 June 2016, Qingdao, China. pp: 31-34.

Emam A.M., Azoz A., Mehaisen G.M.K., Ferrnand N., Ahmed N.A. 2017. Diversity assessment among native middle Egypt rabbit populations in North upper- Egypt province by microsatellite polymorphism. World Rabbit Sci., 25: 9-16. https://doi.org/10.4995/wrs.2017.5298

Ennafaa H., Monnerot M., Gaaied A.E., Mounolou J.C. 1987. Rabbit mitochondrial DNA: preliminary comparison between some domestic and wild animals. Genet. Select. Evol.,19:279-288. https://doi.org/10.1186/1297-9686-19-3-279

FAO. 2007. Global plan of action for animal genetic resources and the Interlaken declaration. Available at http://www.fao.org/docrep/010/a1404e/a1404e00.htm. Accessed August 2019.

FAO. 2011. Animal production and health guidelines (9), Molecular genetic characterization of animal genetic resources, Commission on genetic resources for food and agriculture. Food and Agriculture Organization of the United Nations. Rome.

Fu Y.X., Li W.H. 1993. Statistical tests of neutrality of mutations. Genetics,133: 693-709.

Fuller S.J., Wilson, J.C., Mather P.B. 1997. Patterns of differentiation among wild rabbit populations Oryctolagus Cuniculus L. in arid and semiarid ecosystems of North-Eastern Australia. Mol. Eco., 6: 145-153. https://doi.org/10.1046/j.1365-294X.1997.00167.x

Gaggiotti O.E. 2003. Genetic threats to population persistence. Ann. Zool. Fennici, 40: 155-168. Galal E.S.E., Khalil M.H. 1994. Development of rabbit industry in Egypt. Cahiers Options Méditerranéennes, 8: 43-56.

Geraldes A., Ferrand N., Nachman M.W. 2006. Contrasting patterns of introgression at X-linked loci across the hybrid zone between subspecies of the European rabbit (Oryctolagus cuniculus). Genetics, 173, 919-933. https://doi.org/10.1534/genetics.105.054106

Ghalayini M, Launay A, BridierNahmias A, Clermont O, Denamur E, Lescat M, Tenaillon O. 2018. Evolution of a dominant natural isolate of Escherichia coli in the human gut over the course of a year suggests a neutral evolution with reduced effective population size. Appl. Environ. Microbiol., 84: e02377-17. https://doi.org/10.1128/AEM.02377-17

González-Redondo P. 2007. Estado de las poblaciones y posibilidades de recuperación del conejo doméstico común Español. In Proc.: IV Jornadas Ibéricas de Razas Autóctonas y sus Productos Tradicionales: Innovación, Seguridad y Cultura Alimentarias. Seville (Spain), pp. 367-372.

Grimal A., Safaa H.M., Saenz-de-Juano M.D., Viudes-de-Castro M.P., Mehaisen G.M.K., Elsayed D.A.A., Lavara R., Marco Jiménez F., Vicente J.S. 2012. Phylogenetic relationship among four Egyptian and one Spanish rabbit populations based on microsatellite markers. In Proc.: 10th World Rabbit Congress, 3-6 September, 2012, Sharm El-Sheikh, Egypt, pp. 177-181.

Guo H., Jiao Y., Tan X., Wang X., Huang X., Huizhe X., Jin H. and. Paterson, A.H. 2019. Gene duplication and genetic innovation in cereal genomes. Genome Res. 29: 261-269. https://doi.org/10.1101/gr.237511.118

Guo H., Jiao Y., Tan X., Wang X., Huang X., Jin H., Paterson A.H. Gene duplication and genetic innovation in cereal genomes. Genome Res., 29: 261-269.

Gupta A., Bhardwaj A., Supriya, Sharma P., Pal Y., Kumar S. 2015. Mitochondrial DNA- a Tool for Phylogenetic and Biodiversity Search in Equines. J. Biodivers Endanger Species, S1: 006. https://doi.org/10.4172/2332-2543.S1-006

Hall S.J.G. 2004. Livestock biodiversity: genetic resources for the farming of the future. Blackwell Science Ltd. Oxford, United Kingdom. 280 pp. https://doi.org/10.1002/9780470995433

Jayaraman R. 2011. Hypermutation and stress adaptation in bacteria. J. Genet., 90: 383-391. https://doi.org/10.1007/s12041-011-0086-6

Kekkonen J., Brommer J.E. 2014. Reducing the loss of genetic diversity associated with assisted colonization-like introductions of animals. Available at http://www.currentzoology.org/site_media/onlinefirst/downloadable_file/2014/12/01/Kekkonen.pdf. Accessed January 2015.

Khalil M.H. 2002. The Baladi Rabbits (Egypt). In: Rabbit genetic resources in Mediterranean Countries. Eds. M. H. Khalil and M. Baselga. Options Mediterranéennes Serie B, 38: 39-50.

Kim J.H., Byun M.J., Kim M.J., Suh S.W., Ko Y.G., Lee C.W., Jung K.S., Kim E.S., Yu D.J., Kim W.Y., Choi S.B. 2013. MtDNA diversity and phylogenetic state of Korean cattle breed, Chikso. Asian-Australas. J. Anim. Sci., 26: 163-170. https://doi.org/10.5713/ajas.2012.12499

Librado P., Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25: 1451-1452. https://doi.org/10.1093/bioinformatics/btp187

Long J.R., Qiu X.P., Zeng F.T., Tang L.M., Zhang Y.P. 2003. Origin of rabbit (Oryctolagus cuniculus) in China: evidence from mitochondrial DNA control region sequence analysis. Anim. Genet., 34: 82-87. https://doi.org/10.1046/j.1365-2052.2003.00945.x

Martin-Burriel, I., Marcos, S., Osta R., García-Muro, E., Zaragoza, P. 1996. Genetic characteristics and distances amongst Spanish and French rabbit population. World Rabbit Sci., 4: 121-126. https://doi.org/10.4995/wrs.1996.282

Ministry of Agriculture and Land Reclamation in Egypt, FAO (2003). First Report on the state of animal Genetic Resources in the Arab Republic of Egypt. FAO, Rome, pp. 23.

Monnerot M., Vigne J.D., Biju-Duval C., Casane D., Callou C., Hardy C., Mougel F., Soriguer R., Dennebouy N., Mounolou J. (1994) Rabbit and man: genetic and historic approach. Genet. Select. Evol., 26: 167s-182s. https://doi.org/10.1186/1297-9686-26-S1-S167

Mougel F., Gautier A, Queney G., Sanchez M., Dennebouy N., Monnerot M. 2002. History of European rabbit populations in France: advantage and disadvantage of mtDNA. Available at https://www.ncbi.nlm.nih.gov/nuccore/AJ535802 Accessed August 2019.

Nguyen N., Brajkovic V., Cubric-Curik V., Ristov S., Veir Z., Szendrő Z., Nagy I., Curik, I. 2018. Analysis of the impact of cytoplasmic and mitochondrial inheritance on litter size and carcass in rabbits. World Rabbit Science, 26: 287-298. https://doi.org/10.4995/wrs.2018.7644

Owuor S.A., Mamati E.G., Kasili R.W. 2019. Origin, Genetic Diversity, and Population Structure of Rabbits (Oryctolagus cuniculus) in Kenya. BioMed. Res. Internat., 2019: 7056940. https://doi.org/10.1155/2019/7056940

Park G., Pichugin Y., Huang W., Traulsen A. 2019. Population size changes and extinction risk of populations driven by mutant interactors. Phys. Rev., E 99, 022305. https://doi.org/10.1103/PhysRevE.99.022305

Peischl S., Excoffier L. 2015. Expansion load: recessive mutations and the role of standing genetic variation. Mol. Ecol., 24: 2084-2094. https://doi.org/10.1111/mec.13154

Sakthivel M., Tamilmani G., Abdul Nazar A.K., Jayakumar R., Sankar M., Rameshkumar P., Anikuttan K.K., Samal A.K., Anbarasu M., Gopakumar G. 2018. Genetic variability of a small captive population of the cobia (Rachycentron canadum) through pedigree analyses. Aquaculture, 498: 435-443. https://doi.org/10.1016/j.aquaculture.2018.08.047

Schmidt D., Pool J. 2002. The effect of population history on the distribution of Tajima's D statistics. Available at http://www.cam.cornell.edu/~deena/TajimasD.pdf. Accessed March 2019.

Schumer M., Xu C., Powell D.L., Durvasula A., Skov L., Holland C., Blazier J.C., Sankararaman S., Andolfatto P., Rosenthal G.G., Przeworski M. 2018. Natural selection interacts with recombination to shape the evolution of hybrid genomes. Science, 360: 656-660 https://doi.org/10.1126/science.aar3684

Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol., 30: 2725-2729. https://doi.org/10.1093/molbev/mst197

Valvo M., Russo R., Mancuso F.P. 2017. mtDNA diversity in a rabbit population from Sicily (Italy). Turk. J. Zool. 41: 645-653. https://doi.org/10.3906/zoo-1511-53

van der Loo W., Mougel F., Sanchez M.S., Bouton C., Castien E., Soriguer R., Hamers R., Monnerot M. 1997. Evolutionary patterns at the antibody constant region in rabbit (Oryctolagus cuniculus): characterization of endemic b-locus haplotypes and their frequency correlation with major mitochondrial gene types in Spain. Gibier Faune Sauvage, 14: 427-449.

Wares J.P. 2010. Natural distributions of mitochondrial sequence diversity support new null hypotheses. Evolution 64: 1136-1142. https://doi.org/10.1111/j.1558-5646.2009.00870.x

Watson J.P.N., Davis S.J.M. 2019. Shape differences in the pelvis of the rabbit, Oryctolagus cuniculus (L.), and their genetic associations. Available at https://hal.archives-ouvertes.fr/hal-01918838v2 Accessed March 2019.

Yu Yeh S., Hsuan Song C., Llu-lin T., Chung Chou C. 2019. The effects of crossbreeding, age, and sex on erythrocyte indices and biochemical variables in crossbred pet rabbits (Oryctolagus cuniculus). Vet. Clin. Pathol., 48: 469-480. https://doi.org/10.1111/vcp.12775

Zaragoza P., Arana A., Zaragoza I., Amorena B. 1987. Blood biochemical polymorphisms in rabbits presently bred in Spain: Genetic variation and distances amongst populations. Aust. J. Biol. Sci., 40: 275-286. https://doi.org/10.1071/BI9870275

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