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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

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Conesa, A.; Götz, S.; Garcia-Gomez, JM.; Terol, J.; Talón, M.; Robles Viejo, M. (2005). Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 21(18):3674-3676. https://doi.org/10.1093/bioinformatics/bti610

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Title: Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
Author: Conesa, Ana Götz, Stefan Garcia-Gomez, Juan M Terol, Javier Talón, Manuel Robles Viejo, Montserrat
UPV Unit: Universitat Politècnica de València. Departamento de Física Aplicada - Departament de Física Aplicada
Issued date:
Abstract:
[EN] We present here Blast2GO (B2G), a research tool designed with the main purpose of enabling Gene Ontology (GO) based data mining on sequence data for which no GO annotation is yet available. B2G joints in one application ...[+]
Subjects: Gene-Ontology
Copyrigths: Cerrado
Source:
Bioinformatics. (issn: 1367-4803 )
DOI: 10.1093/bioinformatics/bti610
Publisher:
Oxford University Press
Publisher version: https://doi.org/10.1093/bioinformatics/bti610
Project ID:
info:eu-repo/grantAgreement/EC/FP6/503094/EU/WEB ACCESSIBLE MR DECISION SUPPORT SYSTEM FOR BRAIN TUMOUR DIAGNOSIS AND PROGNOSIS, INCORPORATING IN VIVO AND EX VIVO GENOMIC AND METABOLIMIC DATA/ETUMOUR/
info:eu-repo/grantAgreement/MICYT//GEN2001-4885-C05-03/ES/ESTUDIO DE LOS FACTORES IMPLICADOS EN EL DESARROLLO Y CALIDAD DEL FRUTO DE LOS CITRICOS MEDIANTE GENOMICA FUNCIONAL/
info:eu-repo/grantAgreement/ISCIII//G03%2F160/
Thanks:
The authors thank Dr Timothy Williams for fruitful discussions andcomments on the software and Nils Bluethgen for kindly providingthe Gossip software and supporting integration in B2G. This workhas been funded by MCyT (GEN ...[+]
Type: Artículo

References

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Al-Shahrour, F., Diaz-Uriarte, R., & Dopazo, J. (2004). FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics, 20(4), 578-580. doi:10.1093/bioinformatics/btg455

Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., … Sherlock, G. (2000). Gene Ontology: tool for the unification of biology. Nature Genetics, 25(1), 25-29. doi:10.1038/75556

Doniger, S. W., Salomonis, N., Dahlquist, K. D., Vranizan, K., Lawlor, S. C., & Conklin, B. R. (2003). Genome Biology, 4(1), R7. doi:10.1186/gb-2003-4-1-r7

Groth, D., Lehrach, H., & Hennig, S. (2004). GOblet: a platform for Gene Ontology annotation of anonymous sequence data. Nucleic Acids Research, 32(Web Server), W313-W317. doi:10.1093/nar/gkh406

Khan, S., Situ, G., Decker, K., & Schmidt, C. J. (2003). GoFigure: Automated Gene OntologyTM annotation. Bioinformatics, 19(18), 2484-2485. doi:10.1093/bioinformatics/btg338

Martin, D. M., Berriman, M., & Barton, G. J. (2004). BMC Bioinformatics, 5(1), 178. doi:10.1186/1471-2105-5-178

Zehetner, G. (2003). OntoBlast function: from sequence similarities directly to potential functional annotations by ontology terms. Nucleic Acids Research, 31(13), 3799-3803. doi:10.1093/nar/gkg555

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