- -

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

RiuNet: Institutional repository of the Polithecnic University of Valencia

Share/Send to

Cited by

Statistics

  • Estadisticas de Uso

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

Show simple item record

Files in this item

dc.contributor.author Conesa, Ana es_ES
dc.contributor.author Götz, Stefan es_ES
dc.contributor.author Garcia-Gomez, Juan M es_ES
dc.contributor.author Terol, Javier es_ES
dc.contributor.author Talón, Manuel es_ES
dc.contributor.author Robles Viejo, Montserrat es_ES
dc.date.accessioned 2020-10-07T03:34:26Z
dc.date.available 2020-10-07T03:34:26Z
dc.date.issued 2005-09-15 es_ES
dc.identifier.issn 1367-4803 es_ES
dc.identifier.uri http://hdl.handle.net/10251/151293
dc.description.abstract [EN] We present here Blast2GO (B2G), a research tool designed with the main purpose of enabling Gene Ontology (GO) based data mining on sequence data for which no GO annotation is yet available. B2G joints in one application GO annotation based on similarity searches with statistical analysis and highlighted visualization on directed acyclic graphs. This tool offers a suitable platform for functional genomics research in non-model species. B2G is an intuitive and interactive desktop application that allows monitoring and comprehension of the whole annotation and analysis process. es_ES
dc.description.sponsorship The authors thank Dr Timothy Williams for fruitful discussions andcomments on the software and Nils Bluethgen for kindly providingthe Gossip software and supporting integration in B2G. This workhas been funded by MCyT (GEN 2001-4885-C05-03) and eTumourProject (FP6-2002-LIFESCIHEALTH 503094). The authors thankthe INBIOMED G03/160 research thematic network financed byFIS of the Instituto de Salud Carlos III. es_ES
dc.language Inglés es_ES
dc.publisher Oxford University Press es_ES
dc.relation.ispartof Bioinformatics es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Gene-Ontology es_ES
dc.subject.classification FISICA APLICADA es_ES
dc.subject.classification CIENCIAS DE LA COMPUTACION E INTELIGENCIA ARTIFICIAL es_ES
dc.title Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1093/bioinformatics/bti610 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/EC/FP6/503094/EU/WEB ACCESSIBLE MR DECISION SUPPORT SYSTEM FOR BRAIN TUMOUR DIAGNOSIS AND PROGNOSIS, INCORPORATING IN VIVO AND EX VIVO GENOMIC AND METABOLIMIC DATA/ETUMOUR/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICYT//GEN2001-4885-C05-03/ES/ESTUDIO DE LOS FACTORES IMPLICADOS EN EL DESARROLLO Y CALIDAD DEL FRUTO DE LOS CITRICOS MEDIANTE GENOMICA FUNCIONAL/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/ISCIII//G03%2F160/ es_ES
dc.rights.accessRights Cerrado es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Física Aplicada - Departament de Física Aplicada es_ES
dc.description.bibliographicCitation Conesa, A.; Götz, S.; Garcia-Gomez, JM.; Terol, J.; Talón, M.; Robles Viejo, M. (2005). Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 21(18):3674-3676. https://doi.org/10.1093/bioinformatics/bti610 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1093/bioinformatics/bti610 es_ES
dc.description.upvformatpinicio 3674 es_ES
dc.description.upvformatpfin 3676 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 21 es_ES
dc.description.issue 18 es_ES
dc.identifier.pmid 16081474 es_ES
dc.relation.pasarela S\28432 es_ES
dc.contributor.funder European Commission es_ES
dc.contributor.funder Instituto de Salud Carlos III es_ES
dc.contributor.funder Ministerio de Ciencia y Tecnología es_ES
dc.description.references Al-Shahrour, F., Diaz-Uriarte, R., & Dopazo, J. (2004). FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics, 20(4), 578-580. doi:10.1093/bioinformatics/btg455 es_ES
dc.description.references Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., … Sherlock, G. (2000). Gene Ontology: tool for the unification of biology. Nature Genetics, 25(1), 25-29. doi:10.1038/75556 es_ES
dc.description.references Doniger, S. W., Salomonis, N., Dahlquist, K. D., Vranizan, K., Lawlor, S. C., & Conklin, B. R. (2003). Genome Biology, 4(1), R7. doi:10.1186/gb-2003-4-1-r7 es_ES
dc.description.references Groth, D., Lehrach, H., & Hennig, S. (2004). GOblet: a platform for Gene Ontology annotation of anonymous sequence data. Nucleic Acids Research, 32(Web Server), W313-W317. doi:10.1093/nar/gkh406 es_ES
dc.description.references Khan, S., Situ, G., Decker, K., & Schmidt, C. J. (2003). GoFigure: Automated Gene OntologyTM annotation. Bioinformatics, 19(18), 2484-2485. doi:10.1093/bioinformatics/btg338 es_ES
dc.description.references Martin, D. M., Berriman, M., & Barton, G. J. (2004). BMC Bioinformatics, 5(1), 178. doi:10.1186/1471-2105-5-178 es_ES
dc.description.references Zehetner, G. (2003). OntoBlast function: from sequence similarities directly to potential functional annotations by ontology terms. Nucleic Acids Research, 31(13), 3799-3803. doi:10.1093/nar/gkg555 es_ES


This item appears in the following Collection(s)

Show simple item record