- -

Mechanical unfolding of long human telomeric RNA (TERRA)

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Mechanical unfolding of long human telomeric RNA (TERRA)

Mostrar el registro sencillo del ítem

Ficheros en el ítem

dc.contributor.author Garavís, M. es_ES
dc.contributor.author Bocanegra, R. es_ES
dc.contributor.author Herrero-Galán, E. es_ES
dc.contributor.author González, C. es_ES
dc.contributor.author Villasante, A. es_ES
dc.contributor.author Arias-Gonzalez, J. R. es_ES
dc.date.accessioned 2020-10-21T03:31:19Z
dc.date.available 2020-10-21T03:31:19Z
dc.date.issued 2013 es_ES
dc.identifier.issn 1359-7345 es_ES
dc.identifier.uri http://hdl.handle.net/10251/152715
dc.description.abstract [EN] We report the first single molecule investigation of TERRA molecules. By using optical-tweezers and other biophysical techniques, we have found that long RNA constructions of up to 25 GGGUUA repeats form higher order structures comprised of single parallel G-quadruplex blocks, which unfold at lower forces than their DNA counterparts. es_ES
dc.description.sponsorship This work was supported by grants from the Spanish Ministry of Science and Innovation (grants RYC2007-01765 to JRA-G, BFU2011-30295-C02-01 to AV, and CTQ2010-21567-C02-02 to CG). MG was supported by the FPI fellowship BES-2009-027909. RB and EH-G were supported by Comunidad de Madrid, grant CAM-S2009MAT-1507. AV acknowledges an institutional grant from the Fundacion Ramon Areces to the CBMSO. JRA-G wants to thank Prof. J. L. Carrascosa and Prof. J. M. Valpuesta (CNB-CSIC) for their continuous support and encouragement in this research. We also acknowledge the excellent technical assistance of Beatriz de Pablos (CBMSO). es_ES
dc.language Inglés es_ES
dc.publisher The Royal Society of Chemistry es_ES
dc.relation.ispartof Chemical Communications es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject G-quadruplex es_ES
dc.subject TERRA es_ES
dc.subject Single-molecule es_ES
dc.subject Optical tweezers es_ES
dc.subject Unfolding es_ES
dc.subject Stability es_ES
dc.subject.classification FISICA APLICADA es_ES
dc.title Mechanical unfolding of long human telomeric RNA (TERRA) es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1039/c3cc42981d es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MEC//RYC-2007-01765/ES/RYC-2007-01765/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/Gobierno de la Comunidad de Madrid//S2009%2FMAT-1507/ES/Nuevos materiales y dispositivos biofuncionales híbridos en nanociencia/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//BFU2011-30295-C02-01/ES/ESTUDIO MULTIDISCIPLINAR PARA DESENTRAÑAR LOS MECANISMOS DEL COMPORTAMIENTO CROMOSOMICO: DE LA ESTRUCTURA DEL RNA A LA DINAMICA CROMOSOMICA./ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//CTQ2010-21567-C02-02/ES/ESTRUCTURA, SOLVATACION Y UNION DE LIGANDOS DE ARNES Y PROTEINAS CON CONFORMACIONES MALIGNAS MEDIANTE RMN/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//BES-2009-027909-2/ES/BES-2009-027909-2/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Física Aplicada - Departament de Física Aplicada es_ES
dc.description.bibliographicCitation Garavís, M.; Bocanegra, R.; Herrero-Galán, E.; González, C.; Villasante, A.; Arias-Gonzalez, JR. (2013). Mechanical unfolding of long human telomeric RNA (TERRA). Chemical Communications. 49(57):6397-6399. https://doi.org/10.1039/c3cc42981d es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1039/c3cc42981d es_ES
dc.description.upvformatpinicio 6397 es_ES
dc.description.upvformatpfin 6399 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 49 es_ES
dc.description.issue 57 es_ES
dc.identifier.pmid 23748212 es_ES
dc.relation.pasarela S\408020 es_ES
dc.contributor.funder Comunidad de Madrid es_ES
dc.contributor.funder Fundación Ramón Areces es_ES
dc.contributor.funder Ministerio de Ciencia e Innovación es_ES
dc.contributor.funder Ministerio de Educación y Ciencia es_ES
dc.description.references De Lange, T. (2005). Shelterin: the protein complex that shapes and safeguards human telomeres. Genes & Development, 19(18), 2100-2110. doi:10.1101/gad.1346005 es_ES
dc.description.references Blackburn, E. H. (1991). Structure and function of telomeres. Nature, 350(6319), 569-573. doi:10.1038/350569a0 es_ES
dc.description.references Biffi, G., Tannahill, D., McCafferty, J., & Balasubramanian, S. (2013). Quantitative visualization of DNA G-quadruplex structures in human cells. Nature Chemistry, 5(3), 182-186. doi:10.1038/nchem.1548 es_ES
dc.description.references Paeschke, K., Simonsson, T., Postberg, J., Rhodes, D., & Lipps, H. J. (2005). Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo. Nature Structural & Molecular Biology, 12(10), 847-854. doi:10.1038/nsmb982 es_ES
dc.description.references Hwang, H., Buncher, N., Opresko, P. L., & Myong, S. (2012). POT1-TPP1 Regulates Telomeric Overhang Structural Dynamics. Structure, 20(11), 1872-1880. doi:10.1016/j.str.2012.08.018 es_ES
dc.description.references Azzalin, C. M., Reichenbach, P., Khoriauli, L., Giulotto, E., & Lingner, J. (2007). Telomeric Repeat Containing RNA and RNA Surveillance Factors at Mammalian Chromosome Ends. Science, 318(5851), 798-801. doi:10.1126/science.1147182 es_ES
dc.description.references Schoeftner, S., & Blasco, M. A. (2007). Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II. Nature Cell Biology, 10(2), 228-236. doi:10.1038/ncb1685 es_ES
dc.description.references Porro, A., Feuerhahn, S., Reichenbach, P., & Lingner, J. (2010). Molecular Dissection of Telomeric Repeat-Containing RNA Biogenesis Unveils the Presence of Distinct and Multiple Regulatory Pathways. Molecular and Cellular Biology, 30(20), 4808-4817. doi:10.1128/mcb.00460-10 es_ES
dc.description.references Deng, Z., Norseen, J., Wiedmer, A., Riethman, H., & Lieberman, P. M. (2009). TERRA RNA Binding to TRF2 Facilitates Heterochromatin Formation and ORC Recruitment at Telomeres. Molecular Cell, 35(4), 403-413. doi:10.1016/j.molcel.2009.06.025 es_ES
dc.description.references De Silanes, I. L., d’ Alcontres, M. S., & Blasco, M. A. (2010). TERRA transcripts are bound by a complex array of RNA-binding proteins. Nature Communications, 1(1). doi:10.1038/ncomms1032 es_ES
dc.description.references Xu, Y., Suzuki, Y., Ito, K., & Komiyama, M. (2010). Telomeric repeat-containing RNA structure in living cells. Proceedings of the National Academy of Sciences, 107(33), 14579-14584. doi:10.1073/pnas.1001177107 es_ES
dc.description.references Martadinata, H., & Phan, A. T. (2009). Structure of Propeller-Type Parallel-Stranded RNA G-Quadruplexes, Formed by Human Telomeric RNA Sequences in K+Solution. Journal of the American Chemical Society, 131(7), 2570-2578. doi:10.1021/ja806592z es_ES
dc.description.references Xu, Y., Kaminaga, K., & Komiyama, M. (2008). G-Quadruplex Formation by Human Telomeric Repeats-Containing RNA in Na+Solution. Journal of the American Chemical Society, 130(33), 11179-11184. doi:10.1021/ja8031532 es_ES
dc.description.references Collie, G. W., Haider, S. M., Neidle, S., & Parkinson, G. N. (2010). A crystallographic and modelling study of a human telomeric RNA (TERRA) quadruplex. Nucleic Acids Research, 38(16), 5569-5580. doi:10.1093/nar/gkq259 es_ES
dc.description.references Collie, G. W., Parkinson, G. N., Neidle, S., Rosu, F., De Pauw, E., & Gabelica, V. (2010). Electrospray Mass Spectrometry of Telomeric RNA (TERRA) Reveals the Formation of Stable Multimeric G-Quadruplex Structures. Journal of the American Chemical Society, 132(27), 9328-9334. doi:10.1021/ja100345z es_ES
dc.description.references Martadinata, H., Heddi, B., Lim, K. W., & Phan, A. T. (2011). Structure of Long Human Telomeric RNA (TERRA): G-Quadruplexes Formed by Four and Eight UUAGGG Repeats Are Stable Building Blocks. Biochemistry, 50(29), 6455-6461. doi:10.1021/bi200569f es_ES
dc.description.references Arora, A., & Maiti, S. (2009). Differential Biophysical Behavior of Human Telomeric RNA and DNA Quadruplex. The Journal of Physical Chemistry B, 113(30), 10515-10520. doi:10.1021/jp810638n es_ES
dc.description.references Joachimi, A., Benz, A., & Hartig, J. S. (2009). A comparison of DNA and RNA quadruplex structures and stabilities. Bioorganic & Medicinal Chemistry, 17(19), 6811-6815. doi:10.1016/j.bmc.2009.08.043 es_ES
dc.description.references Qi, J., & Shafer, R. H. (2007). Human Telomere Quadruplex:  Refolding and Selection of Individual Conformers via RNA/DNA Chimeric Editing†. Biochemistry, 46(25), 7599-7606. doi:10.1021/bi602392u es_ES
dc.description.references Randall, A., & Griffith, J. D. (2009). Structure of Long Telomeric RNA Transcripts. Journal of Biological Chemistry, 284(21), 13980-13986. doi:10.1074/jbc.m900631200 es_ES
dc.description.references Kumari, S., Bugaut, A., & Balasubramanian, S. (2008). Position and Stability Are Determining Factors for Translation Repression by an RNA G-Quadruplex-Forming Sequence within the 5′ UTR of theNRASProto-oncogene†. Biochemistry, 47(48), 12664-12669. doi:10.1021/bi8010797 es_ES
dc.description.references McKenna, S. A., Kim, I., Puglisi, E. V., Lindhout, D. A., Aitken, C. E., Marshall, R. A., & Puglisi, J. D. (2007). Purification and characterization of transcribed RNAs using gel filtration chromatography. Nature Protocols, 2(12), 3270-3277. doi:10.1038/nprot.2007.480 es_ES
dc.description.references Parkinson, G. N., Lee, M. P. H., & Neidle, S. (2002). Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417(6891), 876-880. doi:10.1038/nature755 es_ES
dc.description.references Herrero-Galán, E., Fuentes-Perez, M. E., Carrasco, C., Valpuesta, J. M., Carrascosa, J. L., Moreno-Herrero, F., & Arias-Gonzalez, J. R. (2012). Mechanical Identities of RNA and DNA Double Helices Unveiled at the Single-Molecule Level. Journal of the American Chemical Society, 135(1), 122-131. doi:10.1021/ja3054755 es_ES
dc.description.references Bustamante, C., Bryant, Z., & Smith, S. B. (2003). Ten years of tension: single-molecule DNA mechanics. Nature, 421(6921), 423-427. doi:10.1038/nature01405 es_ES
dc.description.references Yu, Z., Schonhoft, J. D., Dhakal, S., Bajracharya, R., Hegde, R., Basu, S., & Mao, H. (2009). ILPR G-Quadruplexes Formed in Seconds Demonstrate High Mechanical Stabilities. Journal of the American Chemical Society, 131(5), 1876-1882. doi:10.1021/ja806782s es_ES
dc.description.references Koirala, D., Dhakal, S., Ashbridge, B., Sannohe, Y., Rodriguez, R., Sugiyama, H., … Mao, H. (2011). A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands. Nature Chemistry, 3(10), 782-787. doi:10.1038/nchem.1126 es_ES
dc.description.references Dhakal, S., Cui, Y., Koirala, D., Ghimire, C., Kushwaha, S., Yu, Z., … Mao, H. (2013). Structural and mechanical properties of individual human telomeric G-quadruplexes in molecularly crowded solutions. Nucleic Acids Research, 41(6), 3915-3923. doi:10.1093/nar/gkt038 es_ES
dc.description.references De Messieres, M., Chang, J.-C., Brawn-Cinani, B., & La Porta, A. (2012). Single-Molecule Study ofG-Quadruplex Disruption Using Dynamic Force Spectroscopy. Physical Review Letters, 109(5). doi:10.1103/physrevlett.109.058101 es_ES
dc.description.references Schonhoft, J. D., Bajracharya, R., Dhakal, S., Yu, Z., Mao, H., & Basu, S. (2009). Direct experimental evidence for quadruplex–quadruplex interaction within the human ILPR. Nucleic Acids Research, 37(10), 3310-3320. doi:10.1093/nar/gkp181 es_ES
dc.description.references Carrion-Vazquez, M., Oberhauser, A. F., Fowler, S. B., Marszalek, P. E., Broedel, S. E., Clarke, J., & Fernandez, J. M. (1999). Mechanical and chemical unfolding of a single protein: A comparison. Proceedings of the National Academy of Sciences, 96(7), 3694-3699. doi:10.1073/pnas.96.7.3694 es_ES


Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro sencillo del ítem