- -

Quantitative trait loci affecting reproductive phenology in peach

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Quantitative trait loci affecting reproductive phenology in peach

Mostrar el registro sencillo del ítem

Ficheros en el ítem

Thumbnail
Nombre: -Romeu;Monforte;G ...
Tamaño: 1.211Mb
Formato: PDF
Descripción: Versión editorial ...
Abrir
dc.contributor.author Romeu, JF es_ES
dc.contributor.author Monforte Gilabert, Antonio José es_ES
dc.contributor.author Sánchez, Gerardo es_ES
dc.contributor.author Granell Richart, Antonio es_ES
dc.contributor.author Garcia-Brunton, J es_ES
dc.contributor.author Badenes, M.L. es_ES
dc.contributor.author Rios Garcia, Gabino es_ES
dc.date.accessioned 2016-05-12T12:55:16Z
dc.date.available 2016-05-12T12:55:16Z
dc.date.issued 2014-02-22
dc.identifier.issn 1471-2229
dc.identifier.uri http://hdl.handle.net/10251/63981
dc.description.abstract Background: The reproductive phenology of perennial plants in temperate climates is largely conditioned by the duration of bud dormancy, and fruit developmental processes. Bud dormancy release and bud break depends on the perception of cumulative chilling and heat during the bud development. The objective of this work was to identify new quantitative trait loci (QTLs) associated to temperature requirements for bud dormancy release and flowering and to fruit harvest date, in a segregating population of peach. Results: We have identified QTLs for nine traits related to bud dormancy, flowering and fruit harvest in an intraspecific hybrid population of peach in two locations differing in chilling time accumulation. QTLs were located in a genetic linkage map of peach based on single nucleotide polymorphism (SNP) markers for eight linkage groups (LGs) of the peach genome sequence. QTLs for chilling requirements for dormancy release and blooming clustered in seven different genomic regions that partially coincided with loci identified in previous works. The most significant QTL for chilling requirements mapped to LG1, close to the evergrowing locus. QTLs for heat requirement related traits were distributed in nine genomic regions, four of them co-localizing with QTLs for chilling requirement trait. Two major loci in LG4 and LG6 determined fruit harvest time. Conclusions: We identified QTLs associated to nine traits related to the reproductive phenology in peach. A search of candidate genes for these QTLs rendered different genes related to flowering regulation, chromatin modification and hormone signalling. A better understanding of the genetic factors affecting crop phenology might help scientists and breeders to predict changes in genotype performance in a context of global climate change. es_ES
dc.description.sponsorship We thank Matilde Gonzalez for technical assistance. This work was supported by the Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria (INIA)-FEDER (grant no. RTA2007-00060), and the Ministry of Science and Innovation of Spain (grant no. AGL2010-20595). en_EN
dc.language Inglés es_ES
dc.publisher BioMed Central es_ES
dc.relation.ispartof BMC Plant Biology es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject Prunus persica es_ES
dc.subject Bud dormancy es_ES
dc.subject Chilling requirement es_ES
dc.subject Heat requirement es_ES
dc.subject Flowering es_ES
dc.subject Fruit maturation es_ES
dc.subject QTL es_ES
dc.title Quantitative trait loci affecting reproductive phenology in peach es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1186/1471-2229-14-52
dc.relation.projectID info:eu-repo/grantAgreement/MEC//RTA2007-00060-00-00/ES/MEJORA GENÉTICA Y SANITARIA DEL MELOCOTONERO, CON ESPECIAL REFERENCIA A LA CALIDAD DE LA FRUTA/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//AGL2010-20595/ES/PROGRAMAS DE MEJORA DEL ALBARICOQUERO Y MELOCOTONERO PARA LA OBTENCION Y SELECCION DE NUEVAS VARIEDADES DE ALTA CALIDAD. DESARROLLO DE HERRAMIENTAS GENETICAS Y GENOMICAS/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Romeu, J.; Monforte Gilabert, AJ.; Sánchez, G.; Granell Richart, A.; Garcia-Brunton, J.; Badenes, M.; Rios Garcia, G. (2014). Quantitative trait loci affecting reproductive phenology in peach. BMC Plant Biology. 14(52):1-16. https://doi.org/10.1186/1471-2229-14-52 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1186/1471-2229-14-52 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 16 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 14 es_ES
dc.description.issue 52 es_ES
dc.relation.senia 282431 es_ES
dc.identifier.pmid 24559033 en_EN
dc.identifier.pmcid PMC3941940 en_EN
dc.contributor.funder Ministerio de Ciencia e Innovación es_ES
dc.contributor.funder Ministerio de Educación y Ciencia es_ES
dc.description.references Rohde, A., & Bhalerao, R. P. (2007). Plant dormancy in the perennial context. Trends in Plant Science, 12(5), 217-223. doi:10.1016/j.tplants.2007.03.012 es_ES
dc.description.references Coville, F. V. (1920). The Influence of Cold in Stimulating the Growth of Plants. Proceedings of the National Academy of Sciences, 6(7), 434-435. doi:10.1073/pnas.6.7.434 es_ES
dc.description.references Chuine, I. (2010). Why does phenology drive species distribution? Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1555), 3149-3160. doi:10.1098/rstb.2010.0142 es_ES
dc.description.references Hänninen, H., & Tanino, K. (2011). Tree seasonality in a warming climate. Trends in Plant Science, 16(8), 412-416. doi:10.1016/j.tplants.2011.05.001 es_ES
dc.description.references Yu, H., Luedeling, E., & Xu, J. (2010). Winter and spring warming result in delayed spring phenology on the Tibetan Plateau. Proceedings of the National Academy of Sciences, 107(51), 22151-22156. doi:10.1073/pnas.1012490107 es_ES
dc.description.references Nicotra, A. B., Atkin, O. K., Bonser, S. P., Davidson, A. M., Finnegan, E. J., Mathesius, U., … van Kleunen, M. (2010). Plant phenotypic plasticity in a changing climate. Trends in Plant Science, 15(12), 684-692. doi:10.1016/j.tplants.2010.09.008 es_ES
dc.description.references Rohde, A., Storme, V., Jorge, V., Gaudet, M., Vitacolonna, N., Fabbrini, F., … Bastien, C. (2010). Bud set in poplar - genetic dissection of a complex trait in natural and hybrid populations. New Phytologist, 189(1), 106-121. doi:10.1111/j.1469-8137.2010.03469.x es_ES
dc.description.references Fabbrini, F., Gaudet, M., Bastien, C., Zaina, G., Harfouche, A., Beritognolo, I., … Sabatti, M. (2012). Phenotypic plasticity, QTL mapping and genomic characterization of bud set in black poplar. BMC Plant Biology, 12(1), 47. doi:10.1186/1471-2229-12-47 es_ES
dc.description.references Celton, J.-M., Martinez, S., Jammes, M.-J., Bechti, A., Salvi, S., Legave, J.-M., & Costes, E. (2011). Deciphering the genetic determinism of bud phenology in apple progenies: a new insight into chilling and heat requirement effects on flowering dates and positional candidate genes. New Phytologist, 192(2), 378-392. doi:10.1111/j.1469-8137.2011.03823.x es_ES
dc.description.references Quilot, B., Wu, B. H., Kervella, J., G�nard, M., Foulongne, M., & Moreau, K. (2004). QTL analysis of quality traits in an advanced backcross between Prunus persica cultivars and the wild relative species P. davidiana. Theoretical and Applied Genetics, 109(4), 884-897. doi:10.1007/s00122-004-1703-z es_ES
dc.description.references Dirlewanger, E., Quero-García, J., Le Dantec, L., Lambert, P., Ruiz, D., Dondini, L., … Arús, P. (2012). Comparison of the genetic determinism of two key phenological traits, flowering and maturity dates, in three Prunus species: peach, apricot and sweet cherry. Heredity, 109(5), 280-292. doi:10.1038/hdy.2012.38 es_ES
dc.description.references Olukolu, B. A., Trainin, T., Fan, S., Kole, C., Bielenberg, D. G., Reighard, G. L., … Holland, D. (2009). Genetic linkage mapping for molecular dissection of chilling requirement and budbreak in apricot (Prunus armeniacaL.). Genome, 52(10), 819-828. doi:10.1139/g09-050 es_ES
dc.description.references Fan, S., Bielenberg, D. G., Zhebentyayeva, T. N., Reighard, G. L., Okie, W. R., Holland, D., & Abbott, A. G. (2009). Mapping quantitative trait loci associated with chilling requirement, heat requirement and bloom date in peach (Prunus persica). New Phytologist, 185(4), 917-930. doi:10.1111/j.1469-8137.2009.03119.x es_ES
dc.description.references Jiménez, S., Li, Z., Reighard, G. L., & Bielenberg, D. G. (2010). Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant. BMC Plant Biology, 10(1), 25. doi:10.1186/1471-2229-10-25 es_ES
dc.description.references Verde, I., Bassil, N., Scalabrin, S., Gilmore, B., Lawley, C. T., Gasic, K., … Peace, C. (2012). Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm. PLoS ONE, 7(4), e35668. doi:10.1371/journal.pone.0035668 es_ES
dc.description.references Leida, C., Terol, J., Marti, G., Agusti, M., Llacer, G., Badenes, M. L., & Rios, G. (2010). Identification of genes associated with bud dormancy release in Prunus persica by suppression subtractive hybridization. Tree Physiology, 30(5), 655-666. doi:10.1093/treephys/tpq008 es_ES
dc.description.references Leida, C., Conesa, A., Llácer, G., Badenes, M. L., & Ríos, G. (2011). Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner. New Phytologist, 193(1), 67-80. doi:10.1111/j.1469-8137.2011.03863.x es_ES
dc.description.references Holec, S., & Berger, F. (2011). Polycomb Group Complexes Mediate Developmental Transitions in Plants. Plant Physiology, 158(1), 35-43. doi:10.1104/pp.111.186445 es_ES
dc.description.references Pandey, R. (2002). Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucleic Acids Research, 30(23), 5036-5055. doi:10.1093/nar/gkf660 es_ES
dc.description.references Verde, I., Abbott, A. G., Scalabrin, S., Jung, S., Shu, S., … Grimwood, J. (2013). The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nature Genetics, 45(5), 487-494. doi:10.1038/ng.2586 es_ES
dc.description.references Jiménez, S., Lawton-Rauh, A. L., Reighard, G. L., Abbott, A. G., & Bielenberg, D. G. (2009). Phylogenetic analysis and molecular evolution of the dormancy associated MADS-box genes from peach. BMC Plant Biology, 9(1), 81. doi:10.1186/1471-2229-9-81 es_ES
dc.description.references Li, Z., Reighard, G. L., Abbott, A. G., & Bielenberg, D. G. (2009). Dormancy-associated MADS genes from the EVG locus of peach [Prunus persica (L.) Batsch] have distinct seasonal and photoperiodic expression patterns. Journal of Experimental Botany, 60(12), 3521-3530. doi:10.1093/jxb/erp195 es_ES
dc.description.references Jiménez, S., Reighard, G. L., & Bielenberg, D. G. (2010). Gene expression of DAM5 and DAM6 is suppressed by chilling temperatures and inversely correlated with bud break rate. Plant Molecular Biology, 73(1-2), 157-167. doi:10.1007/s11103-010-9608-5 es_ES
dc.description.references Yamane, H., Ooka, T., Jotatsu, H., Hosaka, Y., Sasaki, R., & Tao, R. (2011). Expressional regulation of PpDAM5 and PpDAM6, peach (Prunus persica) dormancy-associated MADS-box genes, by low temperature and dormancy-breaking reagent treatment. Journal of Experimental Botany, 62(10), 3481-3488. doi:10.1093/jxb/err028 es_ES
dc.description.references Leida, C., Conejero, A., Arbona, V., Gómez-Cadenas, A., Llácer, G., Badenes, M. L., & Ríos, G. (2012). Chilling-Dependent Release of Seed and Bud Dormancy in Peach Associates to Common Changes in Gene Expression. PLoS ONE, 7(5), e35777. doi:10.1371/journal.pone.0035777 es_ES
dc.description.references Horvath, D. P., Sung, S., Kim, D., Chao, W., & Anderson, J. (2010). Characterization, expression and function of DORMANCY ASSOCIATED MADS-BOX genes from leafy spurge. Plant Molecular Biology, 73(1-2), 169-179. doi:10.1007/s11103-009-9596-5 es_ES
dc.description.references Sasaki, R., Yamane, H., Ooka, T., Jotatsu, H., Kitamura, Y., Akagi, T., & Tao, R. (2011). Functional and Expressional Analyses of PmDAM Genes Associated with Endodormancy in Japanese Apricot. Plant Physiology, 157(1), 485-497. doi:10.1104/pp.111.181982 es_ES
dc.description.references Hemming, M. N., & Trevaskis, B. (2011). Make hay when the sun shines: The role of MADS-box genes in temperature-dependant seasonal flowering responses. Plant Science, 180(3), 447-453. doi:10.1016/j.plantsci.2010.12.001 es_ES
dc.description.references He, Y. (2012). Chromatin regulation of flowering. Trends in Plant Science, 17(9), 556-562. doi:10.1016/j.tplants.2012.05.001 es_ES
dc.description.references Santamaría, M., Hasbún, R., Valera, M., Meijón, M., Valledor, L., Rodríguez, J. L., … Rodríguez, R. (2009). Acetylated H4 histone and genomic DNA methylation patterns during bud set and bud burst in Castanea sativa. Journal of Plant Physiology, 166(13), 1360-1369. doi:10.1016/j.jplph.2009.02.014 es_ES
dc.description.references Santamaría, M. E., Rodríguez, R., Cañal, M. J., & Toorop, P. E. (2011). Transcriptome analysis of chestnut (Castanea sativa) tree buds suggests a putative role for epigenetic control of bud dormancy. Annals of Botany, 108(3), 485-498. doi:10.1093/aob/mcr185 es_ES
dc.description.references Cutler, S. R., Rodriguez, P. L., Finkelstein, R. R., & Abrams, S. R. (2010). Abscisic Acid: Emergence of a Core Signaling Network. Annual Review of Plant Biology, 61(1), 651-679. doi:10.1146/annurev-arplant-042809-112122 es_ES
dc.description.references Santiago, J., Rodrigues, A., Saez, A., Rubio, S., Antoni, R., Dupeux, F., … Rodriguez, P. L. (2009). Modulation of drought resistance by the abscisic acid receptor PYL5 through inhibition of clade A PP2Cs. The Plant Journal, 60(4), 575-588. doi:10.1111/j.1365-313x.2009.03981.x es_ES
dc.description.references Horvath, D. P., Anderson, J. V., Chao, W. S., & Foley, M. E. (2003). Knowing when to grow: signals regulating bud dormancy. Trends in Plant Science, 8(11), 534-540. doi:10.1016/j.tplants.2003.09.013 es_ES
dc.description.references Ruttink, T., Arend, M., Morreel, K., Storme, V., Rombauts, S., Fromm, J., … Rohde, A. (2007). A Molecular Timetable for Apical Bud Formation and Dormancy Induction in Poplar. The Plant Cell, 19(8), 2370-2390. doi:10.1105/tpc.107.052811 es_ES
dc.description.references Melzer, S., Kampmann, G., Chandler, J., & Apel, K. (1999). FPF1 modulates the competence to flowering in Arabidopsis. The Plant Journal, 18(4), 395-405. doi:10.1046/j.1365-313x.1999.00461.x es_ES
dc.description.references Schubert, D., Primavesi, L., Bishopp, A., Roberts, G., Doonan, J., Jenuwein, T., & Goodrich, J. (2006). Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27. The EMBO Journal, 25(19), 4638-4649. doi:10.1038/sj.emboj.7601311 es_ES
dc.description.references Zemach, A., Kim, M. Y., Hsieh, P.-H., Coleman-Derr, D., Eshed-Williams, L., Thao, K., … Zilberman, D. (2013). The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin. Cell, 153(1), 193-205. doi:10.1016/j.cell.2013.02.033 es_ES
dc.description.references Sridha, S., & Wu, K. (2006). Identification ofAtHD2Cas a novel regulator of abscisic acid responses in Arabidopsis. The Plant Journal, 46(1), 124-133. doi:10.1111/j.1365-313x.2006.02678.x es_ES
dc.description.references Kim, D.-H., & Sung, S. (2010). The Plant Homeo Domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5. Proceedings of the National Academy of Sciences, 107(39), 17029-17034. doi:10.1073/pnas.1010834107 es_ES
dc.description.references Jiang, D., Kong, N. C., Gu, X., Li, Z., & He, Y. (2011). Arabidopsis COMPASS-Like Complexes Mediate Histone H3 Lysine-4 Trimethylation to Control Floral Transition and Plant Development. PLoS Genetics, 7(3), e1001330. doi:10.1371/journal.pgen.1001330 es_ES
dc.description.references Lu, F., Cui, X., Zhang, S., Jenuwein, T., & Cao, X. (2011). Arabidopsis REF6 is a histone H3 lysine 27 demethylase. Nature Genetics, 43(7), 715-719. doi:10.1038/ng.854 es_ES
dc.description.references Yu, C.-W., Liu, X., Luo, M., Chen, C., Lin, X., Tian, G., … Wu, K. (2011). HISTONE DEACETYLASE6 Interacts with FLOWERING LOCUS D and Regulates Flowering in Arabidopsis. Plant Physiology, 156(1), 173-184. doi:10.1104/pp.111.174417 es_ES
dc.description.references Weigel, D., Alvarez, J., Smyth, D. R., Yanofsky, M. F., & Meyerowitz, E. M. (1992). LEAFY controls floral meristem identity in Arabidopsis. Cell, 69(5), 843-859. doi:10.1016/0092-8674(92)90295-n es_ES
dc.description.references Yang, Z., Tian, L., Latoszek-Green, M., Brown, D., & Wu, K. (2005). Arabidopsis ERF4 is a transcriptional repressor capable of modulating ethylene and abscisic acid responses. Plant Molecular Biology, 58(4), 585-596. doi:10.1007/s11103-005-7294-5 es_ES
dc.description.references Bonghi, C., Trainotti, L., Botton, A., Tadiello, A., Rasori, A., Ziliotto, F., … Ramina, A. (2011). A microarray approach to identify genes involved in seed-pericarp cross-talk and development in peach. BMC Plant Biology, 11(1), 107. doi:10.1186/1471-2229-11-107 es_ES
dc.description.references Wang, A., Tan, D., Takahashi, A., Zhong Li, T., & Harada, T. (2007). MdERFs, two ethylene-response factors involved in apple fruit ripening. Journal of Experimental Botany, 58(13), 3743-3748. doi:10.1093/jxb/erm224 es_ES
dc.description.references Manning, K., Tör, M., Poole, M., Hong, Y., Thompson, A. J., King, G. J., … Seymour, G. B. (2006). A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nature Genetics, 38(8), 948-952. doi:10.1038/ng1841 es_ES
dc.description.references Pirona, R., Eduardo, I., Pacheco, I., Da Silva Linge, C., Miculan, M., Verde, I., … Rossini, L. (2013). Fine mapping and identification of a candidate gene for a major locus controlling maturity date in peach. BMC Plant Biology, 13(1), 166. doi:10.1186/1471-2229-13-166 es_ES
dc.description.references Maruyama-Nakashita, A., Nakamura, Y., Tohge, T., Saito, K., & Takahashi, H. (2006). Arabidopsis SLIM1 Is a Central Transcriptional Regulator of Plant Sulfur Response and Metabolism. The Plant Cell, 18(11), 3235-3251. doi:10.1105/tpc.106.046458 es_ES
dc.description.references Seymour, G., Poole, M., Manning, K., & King, G. J. (2008). Genetics and epigenetics of fruit development and ripening. Current Opinion in Plant Biology, 11(1), 58-63. doi:10.1016/j.pbi.2007.09.003 es_ES
dc.description.references Sánchez, G., Besada, C., Badenes, M. L., Monforte, A. J., & Granell, A. (2012). A Non-Targeted Approach Unravels the Volatile Network in Peach Fruit. PLoS ONE, 7(6), e38992. doi:10.1371/journal.pone.0038992 es_ES
dc.description.references Lander, E. S., Green, P., Abrahamson, J., Barlow, A., Daly, M. J., Lincoln, S. E., & Newburg, L. (1987). MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1(2), 174-181. doi:10.1016/0888-7543(87)90010-3 es_ES
dc.description.references Voorrips, R. E. (2002). MapChart: Software for the Graphical Presentation of Linkage Maps and QTLs. Journal of Heredity, 93(1), 77-78. doi:10.1093/jhered/93.1.77 es_ES


Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro sencillo del ítem