- -

Complex dynamics of defective interfering baculoviruses during serial passage in insect cells

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Complex dynamics of defective interfering baculoviruses during serial passage in insect cells

Mostrar el registro completo del ítem

Zwart, MP.; Pijlman, G.; Sardanyes Cayuela, J.; Duarte, J.; Januario, C.; Elena Fito, SF. (2013). Complex dynamics of defective interfering baculoviruses during serial passage in insect cells. Journal of Biological Physics. 39(2):327-342. doi:10.1007/s10867-013-9317-9

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/70076

Ficheros en el ítem

Metadatos del ítem

Título: Complex dynamics of defective interfering baculoviruses during serial passage in insect cells
Autor: Zwart, Mark Peter Pijlman, G.P. Sardanyes Cayuela, Jose Duarte, J Januario, C Elena Fito, Santiago Fco
Entidad UPV: Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes
Fecha difusión:
Resumen:
Defective interfering (DI) viruses are thought to cause oscillations in virus levels, known as the 'Von Magnus effect'. Interference by DI viruses has been proposed to underlie these dynamics, although experimental tests ...[+]
Palabras clave: Baculovirus , Bifurcations , Chaos , Defective interfering virus , Experimental evolution
Derechos de uso: Reserva de todos los derechos
Fuente:
Journal of Biological Physics. (issn: 0092-0606 )
DOI: 10.1007/s10867-013-9317-9
Editorial:
Springer Verlag (Germany)
Versión del editor: http://dx.doi.org/10.1007/s10867-013-9317-9
Código del Proyecto:
info:eu-repo/grantAgreement/MINECO//BFU2012-30805/ES/EVOLUTIONARY SYSTEMS VIROLOGY: EPISTASIS AND THE RUGGEDNESS OF ADAPTIVE LANDSCAPES, MUTATIONS IN REGULATORY SEQUENCES, AND THE HOST DETERMINANTS OF VIRAL FITNESS/ /
info:eu-repo/grantAgreement/MICINN//JCI-2011-10379/ES/JCI-2011-10379/
Agradecimientos:
The authors thank Javier Carrera, Just Vlak and Lia Hemerik for helpful discussion. MPZ was supported by a Rubicon Grant from the Netherlands Organization for Scientific Research (NWO, www.nwo.nl) and a 'Juan de la Cierva' ...[+]
Tipo: Artículo

References

Von Magnus, P.: Incomplete forms of influenza virus. Adv. Virus. Res. 2, 59–79 (1954)

Huang, A.S.: Defective interfering viruses. Annu. Rev. Microbiol. 27, 101–117 (1973)

Kool, M., Voncken, J.W., Vanlier, F.L.J., Tramper, J., Vlak, J.M.: Detection and analysis of Autographa californica nuclear polyhedrosis-virus mutants with defective interfering properties. Virology 183, 739–746 (1991) [+]
Von Magnus, P.: Incomplete forms of influenza virus. Adv. Virus. Res. 2, 59–79 (1954)

Huang, A.S.: Defective interfering viruses. Annu. Rev. Microbiol. 27, 101–117 (1973)

Kool, M., Voncken, J.W., Vanlier, F.L.J., Tramper, J., Vlak, J.M.: Detection and analysis of Autographa californica nuclear polyhedrosis-virus mutants with defective interfering properties. Virology 183, 739–746 (1991)

Wickham, T.J., Davis, T., Granados, R.R., Hammer, D.A., Shuler, M.L., Wood, H.A.: Baculovirus defective interfering particles are responsible for variations in recombinant protein-production as a function of multiplicity of infection. Biotechnol. Lett. 13, 483–488 (1991)

Pijlman, G.P., van den Born, E., Martens, D.E., Vlak, J.M.: Autographa californica baculoviruses with large genomic deletions are rapidly generated in infected insect cells. Virology 283, 132–138 (2001)

Giri, L., Feiss, M.G., Bonning, B.C., Murhammer, D.W.: Production of baculovirus defective interfering particles during serial passage is delayed by removing transposon target sites in fp25k. J. Gen. Virol. 93, 389–399 (2012)

King, L.A., Possee, R.D.: The Baculovirus Expression System. University Press, Cambridge (1992)

Lee, H.Y., Krell, P.J.: Reiterated DNA fragments in defective genomes of Autographa californica nuclear polyhedrosis virus are competent for AcMNPV-dependent DNA replication. Virology 202, 418–429 (1994)

Pijlman, G.P., Dortmans, J., Vermeesch, A.M.G., Yang, K., Martens, D.E., Goldbach, R.W., Vlak, J.M.: Pivotal role of the non-hr origin of DNA replication in the genesis of defective interfering baculoviruses. J. Virol. 76, 5605–5611 (2002)

Pijlman, G.P., van Schijndel, J.E., Vlak, J.M.: Spontaneous excision of BAC vector sequences from bacmid-derived baculovirus expression vectors upon passage in insect cells. J. Gen. Virol. 84, 2669–2678 (2003)

Pijlman, G.P., Vermeesch, A.M.G., Vlak, J.M.: Cell line-specific accumulation of the baculovirus non-hr origin of DNA replication in infected insect cells. J. Invertebr. Pathol. 84, 214–219 (2003)

Roux, L., Simon, A.E., Holland, J.J.: Effects of defective interfering viruses on virus-replication and pathogenesis in vitro and in vivo. Adv. Virus. Res. 40, 181–211 (1991)

Grabau, E.A., Holland, J.J.: Analysis of viral and defective-interfering nucleocapsids in acute and persistent infection by Rhadoviruses. J. Gen. Virol. 60, 87–97 (1982)

Kawai, A., Matsumoto, S., Tanabe, K.: Characterization of Rabies viruses recovered from persistently infected BHK cells. Virology 67, 520–533 (1975)

Roux, L., Holland, J.J.: Viral genome synthesis in BHK-21 cells persistently infected with Sendai virus. Virology 100, 53–64 (1980)

Palma, E.L., Huang, A.: Cyclic production of vesicular stomatitis virus cause by defective interfering particles. J. Infect. Dis. 129, 402–410 (1974).

Stauffer Thompson, K.A., Yin, J.: Population dynamics of an RNA virus and its defective interfering particles in passage cultures. Virol. J. 7, 257–266 (2010)

Szathmáry, E.: Cooperation and defection – playing the field in virus dynamics. J. Theor. Biol. 165, 341–356 (1993)

Bangham, C.R.M., Kirkwood, T.B.L.: Defective interfering particles – effects in modulating virus growth and persistence. Virology 179, 821–826 (1990)

Kirkwood, T.B.L., Bangham, C.R.M.: Cycles, chaos, and evolution in virus cultures – a model of defective interfering particles. Proc. Natl. Acad. Sci. USA 91, 8685–8689 (1994)

De Gooijer, C.D., Koken, R.H.M., van Lier, F.L.J., Kool, M., Vlak, J.M., Tramper, J.: A structured dynamic model for the baculovirus infection process in insect-cell reactor configurations. Biotech. Bioeng. 40, 537–548 (1992)

Van Lier, F.L.J., van der Meijs, W.C.J., Grobben, N.G., Olie, R.A., Vlak, J.M., Tramper, J.: Continuous beta-galactosidase production with a recombinant baculovirus insect-cell system in bioreactors. J. Biotechnol. 22, 291–298 (1992)

Van Lier, F.L.J., van den Hombergh, J., de Gooijer, C.D., den Boer, M.M., Vlak, J.M., Tramper, J.: Long-term semi-continuous production of recombinant baculovirus protein in a repeated (fed-)batch two-stage reactor system. Enzyme Microb. Technol. 18, 460–466 (1996)

Zwart, M.P., Erro, E., van Oers, M.M., de Visser, J.A.G.M., Vlak, J.M.: Low multiplicity of infection in vivo results in purifying selection against baculovirus deletion mutants. J. Gen. Virol. 89, 1220–1224 (2008)

Luckow, V.A., Lee, S.C., Barry, G.F., Olins, P.O.: Efficient generation of infectious recombinant baculoviruses by site-specific transposon-mediated insertion of foreign genes into a baculovirus genome propagated in Escherichia coli. J. Virol. 67, 4566–4579 (1993)

Vaughn, J.L., Goodwin, R.H., Tompkins, G.J., McCawley, P.: Establishment of 2 cell lines from insect Spodoptera frugiperda (Lepidoptera, Noctuidae). In Vitro 13, 213–217 (1977)

Zwart, M.P., van Oers, M.M., Cory, J.S., van Lent, J.W.M., van der Werf, W., Vlak, J.M.: Development of a quantitative real-time PCR for determination of genotype frequencies for studies in baculovirus population biology. J. Virol. Meth. 148, 146–154 (2008)

Zwart, M.P., Hemerik, L., Cory, J.S., de Visser, J.A.G.M., Bianchi, F.J.J.A., van Oers, M.M., Vlak, J.M., Hoekstra, R.F., van der Werf, W.: An experimental test of the independent action hypothesis in virus-insect pathosystems. Proc. R. Soc. B 276, 2233–2242 (2009)

Olkin, I., Gleser, L.J., Derman, C.: Probability Models and Applications. Macmillan, New York (1994)

Parker, T., Chua, L.: Practical Numerical Algorithms for Chaotic Systems. Springer-Verlag, Berlin (1989)

Dieci, L., van Vleck, E.S.: Computation of a few Lyapunov exponents for continuous and discrete dynamical systems. J. Appl. Numer. Math. 17, 275–291 (1995)

Matsumoto, T., Chua, L.O., Komuro, M.: The double scroll. IEEE Trans. Circuits Syst. 32, 797–818 (1985)

Chua, L.O., Komuro, M., Matsumoto, T.: The double scroll family: rigorous proof of chaos. IEEE Trans. Circuits Syst. 33, 1072–1097 (1986)

Ramasubramanian, K., Sriram, M.S.: A comparative study of computation of Lyapunov spectra with different algorithms. Phys. D: Nonlin. Phenom. 139, 72–86 (2000)

Lee, H.Y., Krell, P.J.: Generation and analysis of defective genomes of Autographa californica nuclear polyhedrosis virus. J. Virol. 66, 4339–4347 (1992)

Kovacs, G.R., Choi, J., Guarino, L.A., Summers MD: Functional dissection of the Autographa californica nuclear polyhedrosis virus immediate early 1 transcriptional regulatory protein. J. Virol. 66, 7429–7437 (1992)

Legendre, P., Legendre, L.: Numerical Ecology. Elsevier, Amsterdam (1998)

Schuster, H.G.: Deterministic Chaos: An Introduction. Wiley-VCH Verlag GmbH & Co. KGaA, Wienheim (2005)

Strogatz, S.H.: Nonlinear Dynamics and Chaos: With Applications to Physics, Biology, Chemistry and Engineering. Westview Press, Cambridge (1994)

Dennis, B., Desharnais, R.A., Cushing, J.M., Henson, S.M., Constantino, R.F.: Can noise induce chaos? Oikos 102, 329–339 (2003)

Crutchfield, J.P., Huberman, B.A.: Fluctuations and the onset of chaos. Phys. Lett. A 77, 407–410 (1980)

Crutchfield, J.P., Farmer, J.D.: Fluctuations and simple chaotic dynamics. Phys. Rep. 92, 45–82 (1982)

[-]

recommendations

 

Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro completo del ítem