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Genetic variability and evolutionary analyses of the coat protein gene of Tomato mosaic virus

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Genetic variability and evolutionary analyses of the coat protein gene of Tomato mosaic virus

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dc.contributor.author Rangel, Ezequiel es_ES
dc.contributor.author Alfaro Fernández, Ana Olvido es_ES
dc.contributor.author Font San Ambrosio, Maria Isabel es_ES
dc.contributor.author Luis-Arteaga, M. es_ES
dc.contributor.author Rubio, Luis es_ES
dc.date.accessioned 2017-06-19T06:40:40Z
dc.date.available 2017-06-19T06:40:40Z
dc.date.issued 2011-12
dc.identifier.issn 0920-8569
dc.identifier.uri http://hdl.handle.net/10251/83102
dc.description.abstract [EN] Tomato mosaic virus (ToMV), a member of the genus Tobamovirus, infects several ornamental and horticultural crops worldwide. In this study, the nucleotide sequences of the coat protein gene of worldwide ToMV isolates were analyzed to estimate the genetic structure and diversity of this virus and the involved evolutionary forces. The phylogenetic analysis showed three clades with high bootstrap support: Clade I contained three ToMV isolates from Brazil collected from pepper, Clade II comprised one Brazilian ToMV isolate from pepper, and Clade III was composed of ToMV isolates collected from different plant hosts (pepper, tomato, eggplant, lilac, camellia, dogwood, red spruce, etc.) and water (from melting ice, lakes and streams) from different countries: USA, Brazil, Korea, Germany, Spain, Denmark (Greenland), China, Taiwan, Malaysia, Iran, and Kazakhstan. With the exception of Brazil, nucleotide diversity within and between different geographic regions was very low, although statistical analyses suggested some gene flow between most of these regions. Our analyses also suggested a strong negative selection which could have contributed to the genetic stability of ToMV. © Springer Science+Business Media, LLC 2011. es_ES
dc.description.sponsorship E. A. Rangel was the recipient of a predoctoral fellowship from the Instituto Nacional de Investigaciones Agricolas (INIA) from Venezuela. en_EN
dc.language Inglés es_ES
dc.publisher Springer Verlag (Germany) es_ES
dc.relation.ispartof Virus Genes es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Phylogeny es_ES
dc.subject Plant virus es_ES
dc.subject Selection es_ES
dc.subject Tobamovirus es_ES
dc.subject ToMV es_ES
dc.subject Water es_ES
dc.subject Article es_ES
dc.subject Aubergine es_ES
dc.subject Bootstrapping es_ES
dc.subject Bottleneck population es_ES
dc.subject Brazil es_ES
dc.subject China es_ES
dc.subject Cladistics es_ES
dc.subject Coat protein gene es_ES
dc.subject Controlled study es_ES
dc.subject Cornus es_ES
dc.subject Deglaciation es_ES
dc.subject Denmark es_ES
dc.subject Gene structure es_ES
dc.subject Genetic stability es_ES
dc.subject Genetic variability es_ES
dc.subject Genotype es_ES
dc.subject Geographic distribution es_ES
dc.subject Germany es_ES
dc.subject Higher plant es_ES
dc.subject Iran es_ES
dc.subject Kazakhstan es_ES
dc.subject Korea es_ES
dc.subject Lake es_ES
dc.subject Lilac es_ES
dc.subject Malaysia es_ES
dc.subject Molecular evolution es_ES
dc.subject Nonhuman es_ES
dc.subject Nucleotide sequence es_ES
dc.subject Pepper es_ES
dc.subject Priority journal es_ES
dc.subject Purifying selection es_ES
dc.subject Red spruce es_ES
dc.subject Sequence analysis es_ES
dc.subject Sequence homology es_ES
dc.subject Spain es_ES
dc.subject Stream (river) es_ES
dc.subject Taiwan es_ES
dc.subject Tea es_ES
dc.subject Tomato es_ES
dc.subject Tomato mosaic virus es_ES
dc.subject United States es_ES
dc.subject Virus gene es_ES
dc.subject Virus isolation es_ES
dc.subject Capsid Proteins es_ES
dc.subject Evolution, Molecular es_ES
dc.subject Genetic Variation es_ES
dc.subject Lycopersicon esculentum es_ES
dc.subject Molecular Sequence Data es_ES
dc.subject Plant Diseases es_ES
dc.subject Camellia es_ES
dc.subject Picea rubens es_ES
dc.subject Solanum melongena es_ES
dc.subject.classification PRODUCCION VEGETAL es_ES
dc.title Genetic variability and evolutionary analyses of the coat protein gene of Tomato mosaic virus es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1007/s11262-011-0651-3
dc.rights.accessRights Cerrado es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Agroforestal Mediterráneo - Institut Agroforestal Mediterrani es_ES
dc.contributor.affiliation Universitat Politècnica de València. Escuela Técnica Superior de Ingeniería Agronómica y del Medio Natural - Escola Tècnica Superior d'Enginyeria Agronòmica i del Medi Natural es_ES
dc.description.bibliographicCitation Rangel, E.; Alfaro Fernández, AO.; Font San Ambrosio, MI.; Luis-Arteaga, M.; Rubio, L. (2011). Genetic variability and evolutionary analyses of the coat protein gene of Tomato mosaic virus. Virus Genes. 43(3):435-438. doi:10.1007/s11262-011-0651-3 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://doi.org/10.1007/s11262-011-0651-3 es_ES
dc.description.upvformatpinicio 435 es_ES
dc.description.upvformatpfin 438 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 43 es_ES
dc.description.issue 3 es_ES
dc.relation.senia 207079 es_ES
dc.identifier.pmid 21881940
dc.contributor.funder Instituto Nacional de Investigaciones Agrícolas, Venezuela es_ES
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