- -

Group 1 LEA proteins, an ancestral plant protein group, are also present in other eukaryotes, and in the archeae and bacteria domains

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Group 1 LEA proteins, an ancestral plant protein group, are also present in other eukaryotes, and in the archeae and bacteria domains

Mostrar el registro sencillo del ítem

Ficheros en el ítem

dc.contributor.author CAMPOS, F. es_ES
dc.contributor.author Cuevas-Velazquez, C es_ES
dc.contributor.author Fares Riaño, Mario Ali es_ES
dc.contributor.author Reyes, J.L es_ES
dc.contributor.author Covarrubias, AA es_ES
dc.date.accessioned 2017-07-14T06:42:22Z
dc.date.available 2017-07-14T06:42:22Z
dc.date.issued 2013-10
dc.identifier.issn 1617-4615
dc.identifier.uri http://hdl.handle.net/10251/85128
dc.description.abstract [EN] Water is an essential element for living organisms, such that various responses have evolved to withstand water deficit in all living species. The study of these responses in plants has had particular relevance given the negative impact of water scarcity on agriculture. Among the molecules highly associated with plant responses to water limitation are the so-called late embryogenesis abundant (LEA) proteins. These proteins are ubiquitous in the plant kingdom and accumulate during the late phase of embryogenesis and in vegetative tissues in response to water deficit. To know about the evolution of these proteins, we have studied the distribution of group 1 LEA proteins, a set that has also been found beyond the plant kingdom, in Bacillus subtilis and Artemia franciscana. Here, we report the presence of group 1 LEA proteins in green algae (Chlorophyita and Streptophyta), suggesting that these group of proteins emerged before plant land colonization. By sequence analysis of public genomic databases, we also show that 34 prokaryote genomes encode group 1 LEA-like proteins; two of them belong to Archaea domain and 32 to bacterial phyla. Most of these microbes live in soil-associated habitats suggesting horizontal transfer from plants to bacteria; however, our phylogenetic analysis points to convergent evolution. Furthermore, we present data showing that bacterial group 1 LEA proteins are able to prevent enzyme inactivation upon freeze-thaw treatments in vitro, suggesting that they have analogous functions to plant LEA proteins. Overall, data in this work indicate that LEA1 proteins' properties might be relevant to cope with water deficit in different organisms. es_ES
dc.description.sponsorship We thank Jaqueline Mazari for excellent technical assistance. We acknowledge to Paul Gaytan and Santiago Becerra from Oligonucleotide Synthesis and DNA Sequencing Facilities of the Instituto de Biotecnologia-UNAM for providing us with the oligonucleotides and DNA sequences used in this work. This work was partially supported by CONACyT-Mexico to AAC (50485 and 132258). C.C.-V. was supported by a PhD fellowship from CONACyT. en_EN
dc.language Inglés es_ES
dc.publisher Springer Verlag (Germany) es_ES
dc.relation.ispartof Molecular Genetics and Genomics es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject LEA proteins es_ES
dc.subject Em proteins es_ES
dc.subject GsiB es_ES
dc.subject YciG es_ES
dc.subject Hydrophilins es_ES
dc.subject Enzyme protection es_ES
dc.title Group 1 LEA proteins, an ancestral plant protein group, are also present in other eukaryotes, and in the archeae and bacteria domains es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1007/s00438-013-0768-2
dc.relation.projectID info:eu-repo/grantAgreement/CONACyT//50485/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/CONACyT//132258/ es_ES
dc.rights.accessRights Cerrado es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Campos, F.; Cuevas-Velazquez, C.; Fares Riaño, MA.; Reyes, J.; Covarrubias, A. (2013). Group 1 LEA proteins, an ancestral plant protein group, are also present in other eukaryotes, and in the archeae and bacteria domains. Molecular Genetics and Genomics. 288(10):503-517. https://doi.org/10.1007/s00438-013-0768-2 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://doi.org/10.1007/s00438-013-0768-2 es_ES
dc.description.upvformatpinicio 503 es_ES
dc.description.upvformatpfin 517 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 288 es_ES
dc.description.issue 10 es_ES
dc.relation.senia 259257 es_ES
dc.identifier.pmid 23861025
dc.contributor.funder Consejo Nacional de Ciencia y Tecnología, México es_ES
dc.description.references Abascal F, Zardoya R, Posada D (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104–2105 es_ES
dc.description.references Asteri I-A, Boutou E, Anastasiou R, Pot B, Vorgias CE, Tsakalidou E, Papadimitriou K (2011) In silico evidence for the horizontal transfer of gsiB, a σB-regulated gene in gram-positive bacteria to lactic acid bacteria. Appl Environ Microbiol 77:3526–3531 es_ES
dc.description.references Battaglia M, Olvera-Carrillo Y, Garciarrubio A, Campos F, Covarrubias AA (2008) The enigmatic LEA proteins and other hydrophilins. Plant Physiol 148:6–24 es_ES
dc.description.references Bensmihen S, To A, Lambert G, Kroj T, Giraudat J, Parcy F (2004) Analysis of an activated ABI5 allele using a new selection method for transgenic Arabidopsis seeds. FEBS Lett 561:127–131 es_ES
dc.description.references Brandon M, Hall BM, Owns KM, Singh KK (2011) Distinct functions of evolutionary conserved MSF1 and late embryogenesis abundant (LEA)-like domains in mitochondria. J Biol Chem 286:39141–39152 es_ES
dc.description.references Browne J, Tunnacliffe A, Burnell A (2002) Anhydrobiosis: plant desiccation gene found in a nematode. Nature 416:38 es_ES
dc.description.references Campos F, Zamudio F, Covarrubias AA (2006) Two different late embryogenesis abundant proteins from Arabidopsis thaliana contain specific domains that inhibit Escherichia coli growth. Biochem Biophys Res Commun 342:406–413 es_ES
dc.description.references Campos F, Guillen G, Reyes JL, Covarrubias AA (2011) A general method of protein purification for recombinant unstructured non-acidic proteins. Protein Expr Purif 80:47–51 es_ES
dc.description.references Chen WH, Ge X, Wang W, Yu J, Hu S (2009) A gene catalogue for post-diapause development of an anhydrobiotic arthropod Artemia franciscana. BMC Genomics 10:52 es_ES
dc.description.references Crooks GE, Hon G, Chandonia JM, Brenner SE (2004) WebLogo: a sequence logo generator. Genome Res 14:1188–1190 es_ES
dc.description.references Del Bem LE, Vincentz MGA (2010) Evolution of xyloglucan-related genes in green plants. BMC Evol Biol 10:341 es_ES
dc.description.references Delseny M, Bies-Etheve N, Carles C, Hull G, Vicient C, Raynal M, Grellet F, Aspart L (2001) Late embryogenesis abundant (LEA) protein gene regulation during Arabidopsis seed maturation. J Plant Physiol 158:419–427 es_ES
dc.description.references Dunning-Hotopp J et al (2007) Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science 317:1753–1756 es_ES
dc.description.references Dure L, Galau GA (1981) Developmental biochemistry of cotton seed embryogenesis and germination. XIII. Regulation of biosynthesis of principal storage proteins. Plant Physiol 68:187–194 es_ES
dc.description.references Erkel C, Kube M, Reinhardt R, Liesack W (2006) Genome of rice cluster I Archaea-the key methane producers in the rice rhizosphere. Science 313:370–372 es_ES
dc.description.references Espelund M, Saebøe-Larssen S, Hughes DW, Galau GA, Larsen F, Jakobsen KS (1992) Late embryogenesis-abundant genes encoding proteins with different numbers of hydrophilic repeats are regulated differentially by abscisic acid and osmotic stress. Plant J 2:241–252 es_ES
dc.description.references Garay-Arroyo A, Colmenero-Flores JM, Garciarrubio A, Covarrubias AA (2000) Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit. J Biol Chem 275:5668–5674 es_ES
dc.description.references Gaubier P, Raynal M, Hull G, Huestis GM, Grellet F, Arenas C, Pagès M, Delseny M (1993) Two different Em-like genes are expressed in Arabidopsis thaliana seeds during maturation. Mol Gen Genet 238:409–418 es_ES
dc.description.references Gilles GJ, Hines KM, Manfre AJ, Marcotte WR Jr (2007) A predicted N-terminal helical domain of a group 1 LEA protein is required for protection of enzyme activity from drying. Plant Physiol Biochem 45:389–399 es_ES
dc.description.references Goyal K, Walton LJ, Tunnacliffe A (2005) LEA proteins prevent protein aggregation due to water stress. Biochem J 388:151–157 es_ES
dc.description.references Graham LE, Arancibia-Avila P, Taylor WA, Strother PK, Cook ME (2012) Aeroterrestrial Coleochaete (Streptophyta, Coleochaetales) models early plant adaptation to land. Am J Bot 99:130–144 es_ES
dc.description.references Hand SC, Jones D, Menze MA, Witt TL (2007) Life without water: expression of plant LEA genes by an anhydrobiotic arthropod. J Exp Zool 307:62–66 es_ES
dc.description.references Hand SC, Menze MA, Toner M, Boswell L, Moore D (2010) LEA proteins during water stress: not just for plants anymore. Annu Rev Physiol 73:115–134 es_ES
dc.description.references Hara M, Fujinaga M, Kuboi T (2004) Radical scavenging activity and oxidative modification of citrus dehydrin. Plant Physiol Biochem 42:657–662 es_ES
dc.description.references Hattori T, Terada T, Hamasuna S (1995) Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1. Plant J 7:913–925 es_ES
dc.description.references Higuchi R (1990) Recombinant PCR. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, San Diego, pp 177–183 es_ES
dc.description.references Hoekstra FA, Golosina EA, Buitink J (2001) Mechanisms of plant desiccation tolerance. Trends Plant Sci 6:431–438 es_ES
dc.description.references Hundertmark M, Popova AV, Rausch S, Seckler R, Hincha DK (2012) Influence of drying on the secondary structure of intrinsically disordered and globular proteins. Biochem Biophys Res Commun 417:122–128 es_ES
dc.description.references Huntley S, Hamann N, Wegener-Feldbrügge S, Treuner-Lange A, Kube M, Reinhardt R, Klages S, Müller R, Ronning CM, Nierman WC, Søgaard-Andersen L (2011) Comparative genomic analysis of fruiting body formation in Myxococcales. Mol Biol Evol 28:1083–1097 es_ES
dc.description.references Imai R, Chang L, Ohta A, Bray EA, Takagi M (1996) A lea-class gene of tomato confers salt and freezing tolerance when expressed in Saccharomyces cerevisiae. Gene 170:243–248 es_ES
dc.description.references Ingram J, Bartels D (1996) The molecular basis of dehydration tolerance in plants. Annu Rev Plant Physiol Plant Mol Biol 47:377–403 es_ES
dc.description.references Kikawada T, Nakahara Y, Kanamori Y, Iwata K-I, Watanabe M, McGee B, Tunnacliffe A, Okuda T (2006) Dehydration-induced expression of LEA proteins in an anhydrobiotic chironomid. Biochem Biophys Res Commun 348:56–61 es_ES
dc.description.references Le SQ, Gascuel O (2008) An improved general amino acid replacement matrix. Mol Biol Evol 25:1307–1320 es_ES
dc.description.references Lee K, Ebbole DJ (1998) Analysis of two transcription activation elements in the promoter of the developmentally regulated con-10 gene of Neurospora crassa. Fungal Genet Biol 23:259–268 es_ES
dc.description.references Liu Y, Zheng Y (2005) PM2, a group 3 LEA protein from soybean, and its 22-mer repeating region confer salt tolerance in Escherichia coli. Biochem Biophys Res Commun 331:325–332 es_ES
dc.description.references Manfre AJ, Lanni LM, Marcotte WR Jr (2006) The Arabidopsis group 1 LATE EMBRYOGENESIS ABUNDANT protein ATEM6 is required for normal seed development. Plant Physiol 140:140–149 es_ES
dc.description.references Manfre AJ, LaHatte GA, Climer CR, Marcotte WR Jr (2009) Seed dehydration and the establishment of desiccation tolerance during seed maturation is altered in the Arabidopsis thaliana mutant atem6-1. Plant Cell Physiol 50:243–253 es_ES
dc.description.references Marcotte WR Jr, Russell SH, Quatrano RS (1989) Abscisic acid responsive sequences from the Em gene of wheat. Plant Cell 1:969–976 es_ES
dc.description.references Maul B, Volker U, Riethdorf S, Engelmann S, Hecker M (1995) Sigma B-dependent regulation of gsiB in response to multiple stimuli in Bacillus subtilis. Mol Gen Genet 248:114–120 es_ES
dc.description.references Olvera-Carrillo Y, Campos F, Reyes JL, Garciarrubio A, Covarrubias AA (2010) Functional analysis of the group 4 late embryogenesis abundant proteins reveals their relevance in the adaptive response during water deficit in Arabidopsis thaliana. Plant Physiol 154:373–390 es_ES
dc.description.references Olvera-Carrillo Y, Reyes JL, Covarrubias AA (2011) Late embryogenesis abundant proteins, versatile players in the plant adaptation to water limiting environments. Plant Signal Behav 6:586–589 es_ES
dc.description.references Parcy F, Valon C, Raynal M, Gaubier-Comella P, Delseny M, Giraudat J (1994) Regulation of gene expression programs during Arabidopsis seed development: roles of the ABI3 locus and of endogenous abscisic acid. Plant Cell 6:1567–1582 es_ES
dc.description.references Patel GB, Sprott GD (1990) Methanosaeta concilii gen. nov., sp. nov. (“Methanothrix concilii”) and Methanosaeta thermoacetophila nom. rev., comb. nov. Int J Syst Bacteriol 40:79–82 es_ES
dc.description.references Reyes JL, Rodrigo MJ, Colmenero-Flores JM, Gil JV, Garay-Arroyo A, Campos F, Salamini F, Bartels D, Covarrubias AA (2005) Hydrophilins from distant organisms can protect enzymatic activities from water limitation effects in vitro. Plant Cell Environ 28:709–718 es_ES
dc.description.references Reyes JL, Campos F, Wei H, Arora R, Yang Y, Karlson DT, Covarrubias AA (2008) Functional dissection of hydrophilins during in vitro freeze protection. Plant Cell Environ 31:1781–1790 es_ES
dc.description.references Sharon MA, Kozarova A, Clegg JS, Vacratsis PO, Warner AH (2009) Characterization of a group 1 late embryogenesis abundant protein in encysted embryos of the brine shrimp Artemia franciscana. Biochem Cell Biol 87:415–430 es_ES
dc.description.references Shih MD, Hoekstra FA, Hsing YC (2008) Late embryogenesis abundant proteins. Adv Bot Res 48:211–255 es_ES
dc.description.references Shih MD, Huang LT, Wei FJ, Wu MT, Folkert A, Hoekstra FA, Hsing YC (2010) OsLEA1a, a new Em-like protein of cereal plants. Plant Cell Physiol 51:2132–2144 es_ES
dc.description.references Soulages JL, Kim K, Walters C, Cushman JC (2002) Temperature-induced extended helix/random coil transitions in a group 1 late embryogenesis-abundant protein from soybean. Plant Physiol 128:822–832 es_ES
dc.description.references Stacy RAP, Aalen RB (1998) Identification of sequence homology between the internal hydrophilic repeated motifs of Group 1 late-embryogenesis-abundant proteins in plants and hydrophilic repeats of the general stress protein GsiB of Bacillus subtilis. Planta 206:476–478 es_ES
dc.description.references Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690 es_ES
dc.description.references Tompa P, Bánki P, Bokor M, Kamasa P, Kovács D, Lasanda G, Tompa K (2006) Protein–water and protein–buffer interactions in the aqueous solution of an intrinsically unstructured plant dehydrin: NMR intensity and DSC aspects. Biophysical J 91:2243–2249 es_ES
dc.description.references Tunnacliffe A, Lapinski J, McGee B (2005) A putative LEA protein, but no trehalose, is present in anhydrobiotic bdelloid rotifers. Hydrobiologia 181:315–321 es_ES
dc.description.references Vicient C, Hull G, Guilleminot J, Devic M, Delseny M (2000) Differential expression of the Arabidopsis genes coding for Em-like proteins. J Exp Bot 51:1211–1220 es_ES
dc.description.references Warner AH, Miroshnychenko O, Kozarova A, Vacratsis PO, MacRae TH, Kim J, Clegg JS (2010) Evidence for multiple group 1 late embryogenesis abundant proteins in encysted embryos of Artemia and their organelles. J Biochem 148:581–592 es_ES
dc.description.references Wolkers WF, McCready S, Brandt WF, Lindsey GG, Hoekstra FA (2001) Isolation and characterization of a D-7 LEA protein from pollen that stabilizes glasses in vitro. Biochim Biophys Acta 1544:196–206 es_ES
dc.description.references Xu D, Duan X, Wang B, Hong B, Ho T, Wu R (1996) Expression of a late embryogenesis abundant protein gene, HVA1, from barley confers tolerance to water deficit and salt stress in transgenic rice. Plant Physiol 110:249–257 es_ES
dc.description.references Yotsui I, Saruhashi M, Kawato T, Taji T, Hayashi T, Quatrano RS, Sakata Y (2013) ABSCISIC ACID INSENSITIVE3 regulates abscisic acid-responsive gene expression with the nuclear factor Y complex through the ACTT-core element in Physcomitrella patens. New Phytol. doi: 10.1111/nph.12251 es_ES
dc.description.references Zou Y, Hong R, He S, Liu G, Huang Z, Zheng Y (2011) Polyproline II structure is critical for the enzyme protective function of soybean Em (LEA1) conserved domains. Biotechnol Lett 33:1667–1673 es_ES


Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro sencillo del ítem