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A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

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A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

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Perpiñá Martín, G.; Esteras Gómez, C.; Gibon, Y.; Monforte Gilabert, AJ.; Picó Sirvent, MB. (2016). A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits. BMC Plant Biology. 16:1-21. https://doi.org/10.1186/s12870-016-0842-0

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Título: A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits
Autor: Perpiñá Martín, Gorka Esteras Gómez, Cristina Gibon, Y. Monforte Gilabert, Antonio José Picó Sirvent, María Belén
Entidad UPV: Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes
Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia
Universitat Politècnica de València. Instituto Universitario de Conservación y Mejora de la Agrodiversidad Valenciana - Institut Universitari de Conservació i Millora de l'Agrodiversitat Valenciana
Fecha difusión:
Resumen:
[EN] Background: Genomic libraries of introgression lines (ILs) consist of collections of homozygous lines with a single chromosomal introgression from a donor genotype in a common, usually elite, genetic background, ...[+]
Palabras clave: Melon , Introgression line , Charentais , Fruit quality , Soluble solids concentration , QTLs
Derechos de uso: Reconocimiento (by)
Fuente:
BMC Plant Biology. (issn: 1471-2229 )
DOI: 10.1186/s12870-016-0842-0
Editorial:
Springer (Biomed Central Ltd.)
Versión del editor: https://doi.org/10.1186/s12870-016-0842-0
Código del Proyecto:
info:eu-repo/grantAgreement/MINECO//AGL2012-40130-C02-02/ES/DESCIFRANDO LA BASE GENETICA DE LA MORFOLOGIA DEL FRUTO Y LA DOMESTICACION DE MELON/
info:eu-repo/grantAgreement/MINECO//AGL2014-53398-C2-2-R/ES/APROXIMACIONES BIOTECNOLOGICAS Y CULTURALES PARA LA MEJORA DE LAS RESISTENCIAS Y EL CONTROL DE ENFERMEDADES EN MELON Y SANDIA/
Agradecimientos:
This work has been carried out in the framework of the Programa de Valorización y Recursos Conjuntos de I + D + i de VLC/CAMPUS and has been funded by the Ministerio de Educación, Cultura y Deporte as part of the Programa ...[+]
Tipo: Artículo

References

Statistics Division of Food and Agriculture Organization of the United Nations (FAOSTAT). http://faostat.fao.org/ . Accessed 30 March 2016.

Blanca JM, Cañizares J, Ziarsolo P, Esteras C, Mir G, Nuez F, Garcia-Mas J, Picó B. Melon transcriptome characterization: Simple Sequence Repeats and Single Nucleotide Polymorphisms discovery for high throughput genotyping across the species. Plant Genome J. 2011;4:118–31.

Blanca J, Esteras C, Ziarsolo P, Pérez D, Fernandez-Pedrosa V, Collado C, et al. Transcriptome sequencing for SNP discovery across Cucumis melo. BMC Genomics. 2012;13:280. [+]
Statistics Division of Food and Agriculture Organization of the United Nations (FAOSTAT). http://faostat.fao.org/ . Accessed 30 March 2016.

Blanca JM, Cañizares J, Ziarsolo P, Esteras C, Mir G, Nuez F, Garcia-Mas J, Picó B. Melon transcriptome characterization: Simple Sequence Repeats and Single Nucleotide Polymorphisms discovery for high throughput genotyping across the species. Plant Genome J. 2011;4:118–31.

Blanca J, Esteras C, Ziarsolo P, Pérez D, Fernandez-Pedrosa V, Collado C, et al. Transcriptome sequencing for SNP discovery across Cucumis melo. BMC Genomics. 2012;13:280.

Melogene. https://melogene.upv.es/ . Accesed 30 March 2016.

Díaz A, Fergany M, Formisano G, Ziarsolo P, Blanca J, Fei Z, Staub JE, Zalapa JE, Cuevas HE, Dace G, Oliver M, Boissot N, Dogimont C, Pitrat M, Hofstede R, van Koert P, Harel-Beja R, Tzuri G, Portnoy V, Cohen S, Schaffer A, Katzir N, Xu Y, Zhang H, Fukino N, Matsumoto S, Garcia-Mas J, Monforte AJ. A consensus linkage map for molecular markers and Quantitative Trait Loci associated with economically important traits in melon (Cucumis melo L.). BMC Plant Biol. 2011;11:111.

Diaz A, Forment J, Argyris JM, Fukino N, Tzuri G, Harel-Berja R, Katzir N, Garcia-Mas J, Monforte AJ. Anchoring the consensus ICuGI genetic map to the melon (Cucumis melo L.) genome. Mol Breed. 2015;35:18.

Esteras C, Formisano G, Roig C, Diaz A, Blanca J, Garcia-Mas J, Gomez-Guillamon ML, Lopez-Sese AI, Lazaro A, Monforte AJ, Pico B. SNP genotyping in melons: genetic variation, population structure, and linkage disequilibrium. Theor Appl Genet. 2013;126:1285–303.

Leida C, Moser C, Esteras C, Sulpice R, Lunn JE, de Langen F, Monforte AJ, Picó B. Variability of candidate genes, genetic structure and association with sugar accumulation and climacteric behavior in a broad germplasm collection of melon (Cucumis melo L.). BMC Genet. 2015;16:28.

Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorente-Galdos B, Mele M, Yang L, Weng Y, Navarro A., Marques-Bonet T, Aranda MA., Nuez F, Picó B, Gabaldon T, Roma G, Guigo R, Casacuberta JM, Arus P, Puigdomenech P. The genome of melon (Cucumis melo L.). Proc Natl Acad Sci. 2012;109:11872–7.

Melonomics. https://melonomics.net/ . Accesed 30 March 2016.

Argyris JM, Ruiz-Herrera A, Madriz-Masis P, Sanseverino W, Morata J, Pujol M, Ramos-Onsins SE, Garcia-Mas J. Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly. BMC Genomics. 2015;16:4.

Mascarell-Creus A, Cañizares J, Vilarrasa-Blasi J, Mora-Garcia S, Blanca J, Gonzalez-Ibeas D, Saladie M, Roig C, Pico B, Lopez-Vigas N, Aranda MA, Garcia-Mas J, Nuez F, Puigdomenech P, Caño-Delgado AI. An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.). BMC Genomics. 2009;10:467.

Roig C, Fita A, Ríos G, Hammond JP, Nuez F, Pico B. Root transcriptional responses of two melon genotypes with contrasting resistance to Monosporascus cannonballus (Pollack et Uecker) infection. BMC Genomics. 2012;13:601.

Nieto C, Piron F, Dalmais M, Marco CF, Moriones E, Gómez-Guillamón ML, Truniger V, Gómez P, Garcia-Mas J, Aranda MA, Bendahmane A. EcoTILLING for the identification of allelic variants of melon eIF4E, a factor that controls virus susceptibility. BMC Plant Biol. 2007;7:34.

Esteras C, Pascual L, Saladie M, Dogimont C, Garcia-Mas J, Nuez F et al. Use of Ecotilling to identify natural allelic variants of melon candidate genes involved in fruit ripening. In Plant Genomics Eur Meet (Plant Gem), Lisboa (Portugal), PLANT GEM. 2009;2009:213.

González M, Xu M, Esteras C, Roig C, Monforte AJ, Troadec C, Pujol M, Nuez F, Bendahmane A, Garcia-Mas J, Pico B. Towards a TILLING platform for functional genomics in Piel de Sapo melons. BMC Res Notes. 2011;4:289.

Dahmani-Mardas F, Troadec C, Boualem A, Lévêque S, Alsadon AA, Aldoss AA, Aldoss AA, Dogimont C, Bendahmane A. Engineering melon plants with improved fruit shelf life using the TILLING approach. PLoS One. 2010;5:e15776.

Perin C, Hagen L, De Conto V, Katzir N, Danin-Poleg Y, Portnoy V, Baudracco-Arnas S, Chadoeuf J, Dogimont C, Pitrat M. A reference map of Cucumis melo based on two recombinant inbred line populations. Theor Appl Genet. 2002;104:1017–34.

Monforte AJ, Oliver M, Gonzalo MJ, Alvarez JM, Dolcet-Sanjuan R, Arús P. Identification of quantitative trait loci involved in fruit quality traits in melon (Cucumis melo L.). Theor Appl Genet. 2004;108:750–8.

Eduardo I, Arus P, Monforte AJ, Obando J, Fernández-Trujillo JP, Martínez JA, Alarcon AL, Álvarez JM, van der Knaap E. Estimating the genetic architecture of fruit quality traits in melon using a genomic library of near isogenic lines. J Am Soc Hortic Sci. 2007;132:80–9.

Fita A, Picó B, Monforte AJ, Nuez F. Genetics of root system architecture using near-isogenic lines of melon. J Am Soc Hortic Sci. 2008;133:448–58.

Cuevas HE, Staub JE, Simon PW, Zalapa JE, McCreight JD. Mapping of genetic loci that regulate quantity of beta-carotene in fruit of US Western Shipping melon (Cucumis melo L.). Theor Appl Genet. 2008;117:1345–59.

Harel-Beja R, Tzuri G, Portnoy V, Lotan-Pompan M, Lev S, Cohen S, Dai N, Yeselson L, Meir A, Libhaber SE, Avisar E, Melame T, van Koert P, Verbakel H, Hofstede R, Volpin H, Oliver M, Fougedoire A, Stalh C, Fauve J, Copes B, Fei Z, Giovannoni J, Ori N, Lewinsohn E, Sherman A, Burger J, Tadmor Y, Schaffer AA, Katzir N. A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes. Theor Appl Genet. 2010;121:511–33.

Vegas J, Garcia-Mas J, Monforte AJ. Interaction between QTLs induces an advance in ethylene biosynthesis during melon fruit ripening. Theor Appl Genet. 2013;126:1531–44.

Diaz A, Zarouri B, Fergany M, Eduardo I, Álvarez JM, Pico B, Monforte AJ. Mapping and introgression of QTL involved in fruit shape transgressive segregation into “Piel de Sapo” melon (Cucucumis melo L.). PLoS One. 2014;9:e104188.

Boualem A, Troadec C, Camps C, Lemhemdi A, Morin H, Sari MA, Fraenkel-Zagouri R, Kovalski I, Dogimont C, Perl-Treves R, Bendahmane A. A cucurbit androecy gene reveals how unisexual flowers develop and dioecy emerges. Science. 2015;350:688–91.

Zamir D. Improving plant breeding with exotic genetic libraries. Nat Rev Genet. 2001;2:983–9.

Barrantes W, Fernández-del-Carmen A, López-Casado G, González-Sánchez MA, Fernandez-Muñoz R, Granell A, Monforte AJ. Highly efficient genomics-assisted development of a library of introgression lines of Solanum pimpinellifolium. Mol Breed. 2014;34:1817–31.

Eshed Y, Zamir D. Introgressions from Lycopersicon pennellii can improve the soluble-solids yield of tomato hybrids. Theor Appl Genet. 1994;88:891–7.

Monforte A, Tanksley S. Development of a set of near isogenic and backcross recombinant inbred lines containing most of the Lycopersicon hirsutum genome in a L. esculentum genetic. Genome. 2000;43(5):803-13.

Chetelat RT, Meglic V. Molecular mapping of chromosome segments introgressed from Solanum lycopersicoides into cultivated tomato (Lycopersicon esculentum). Theor Appl Genet. 2000;100:232–41.

Von Korff M, Wang H, Léon J, Pillen K. Development of candidate introgression lines using an exotic barley accession (Hordeum vulgare ssp. spontaneum) as donor. Theor Appl Genet. 2004;109:1736–45.

Jeuken MJW, Lindhout P. The development of lettuce backcross inbred lines (BILs) for exploitation of the Lactuca saligna (wild lettuce) germplasm. Theor Appl Genet. 2004;109:394–401.

Tian F, Li DJ, Fu Q, Zhu ZF, Fu YC, Wang XK, Sun CQ. Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits. Theor Appl Genet. 2006;112:570–80.

Kirkbride JH. Biosystematic monograph of the genus Cucumis (Cucurbitaceae): botanical identification of cucumbers and melons. 1993.

Esteras C, Nuez F, Picó B. Genetic diversity studies in cucurbits using molecular tools. In: Wang Y, Behera TK, Kole C, editors. Cucurbits: genetics, genomics and breeding of cucurbits. New Hampshire: Science Publishers Inc, Enfield; 2011. p. 140–98.

Pitrat M. Melon (Cucumis melo L.). In: Prohens J, Nuez F, editors. Handbook of plant breeding: vegetables I, vol. 1. New York: Springer New York; 2008. p. 283–315.

Eduardo I, Arús P, Monforte AJ. Development of a genomic library of near isogenic lines (NILs) in melon (Cucumis melo L.) from the exotic accession PI161375. Theor Appl Genet. 2005;112:139–48.

Fernandez-Silva I, Eduardo I, Blanca J, Esteras C, Pico B, Nuez F, Arús P, Garcia-Mas J, Monforte AJ. Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.). Theor Appl Genet. 2008;118:139–50.

Obando-Ulloa JM, Eduardo I, Monforte AJ, Fernández-Trujillo JP. Identification of QTLs related to sugar and organic acid composition in melon using near-isogenic lines. Sci Hortic. 2009;121:425–33.

Obando-Ulloa JM, Ruiz J, Monforte AJ, Fernández-Trujillo JP. Aroma profile of a collection of near-isogenic lines of melon (Cucumis melo L.). Food Chem. 2010;118:815–22.

Obando J, Fernandez-Trujillo JP, Martinez JA, Alarcon AL, Eduardo I, Arus P, Monforte AJ. Identification of melon fruit quality quantitative trait loci using near-isogenic lines. J Am Soc Hortic Sci. 2008;133:139–51.

Essafi A, Díaz-Pendón JA, Moriones E, Monforte AJ, Garcia-Mas J, Martín-Hernández AM. Dissection of the oligogenic resistance to Cucumber mosaic virus in the melon accession PI 161375. Theor Appl Genet. 2009;118:275–84.

Guiu-Aragonés C, Monforte AJ, Saladié M, Correa RX, Garcia-Mas J, Martín-Hernández AM. The complex resistance to cucumber mosaic cucumovirus (CMV) in the melon accession PI161375 is governed by one gene and at least two quantitative trait loci. Mol Breed. 2014;34:351–62.

Fernandez-Silva I, Moreno E, Essafi A, Fergany M, Garcia-Mas J, Martín-Hernandez AM, Alvarez JM, Monforte AJ. Shaping melons: agronomic and genetic characterization of QTLs that modify melon fruit morphology. Theor Appl Genet. 2010;121:931–40.

Monforte AJ, Diaz A, Caño-Delgado A, van der Knaap E. The genetic basis of fruit morphology in horticultural crops: lessons from tomato and melon. J Exp Bot. 2014;65:4625–37.

Paris MK, Zalapa JE, McCreight JD, Staub JE. Genetic dissection of fruit quality components in melon (Cucumis melo L.) using a RIL population derived from exotic × elite US Western Shipping germplasm. Mol Breed. 2008;22:405–19.

Ayub R, Guis M, Ben-Amor M, Gillot L, Roustan JP, Latché A, Bouzayen M, Pech JC. Expression of ACC oxidase antisense gene inhibits ripening of cantaloupe melon fruits. Nat Biotechnol. 1996;14:862–6.

Perin C, Gomez-Jimenez MC, Hagen L, Dogimont C, Pech JC, Latché A, Pitrat M, Lelièvre JM. Molecular and genetic characterization of a non-climacteric phenotype in melon reveals two loci conferring altered ethylene response in fruit. Plant Physiol. 2002;129:300–9.

Moreno E, Obando JM, Dos-Santos N, Fernandez-Trujillo JP, Monforte AJ, Garcia-Mas J. Candidate genes and QTLs for fruit ripening and softening in melon. Theor Appl Genet. 2008;116:589–602.

Clayberg CD. Interaction and linkage test of flesh color genes in Cucumis melo L. Cucurbit Genet Coop Rep. 1992;15:53

Burger Y, Sa’ar U, Katzir N, Paris HS, Yeselson Y, Levin I, Schaffer AA. A single recessive gene for sucrose accumulation in Cucumis melo fruit. J Am Soc Hortic Sci. 2002;127:938–43.

Argyris JM, Pujol M, Martín-Hernández AM, Garcia-Mas J. Combined use of genetic and genomics resources to understand virus resistance and fruit quality traits in melon. Physiol Plant. 2015;155:4–11.

Perchepied L, Pitrat M. Polygenic inheritance of partial resistance to Fusarium oxysporum f. sp. melonis Race 1.2 in melon. Phytopathology. 2004;94:1331–6.

Fernández-Silva I, Moreno E, Eduardo I, Arús P, Alvarez JM, Monforte AJ. On the genetic control of heterosis for fruit shape in melon (Cucumis melo L.). J Hered. 2009;100(2):229–35.

Vossen RHAM, Aten E, Roos A, Den Dunnen JT. High-resolution melting analysis (HRMA) - More than just sequence variant screening. Hum Mutat. 2009;30(6):860–6.

Doyle JJ, Doyle JL. Isolation of plant DNA from fresh tissue. Focus. 1990;12:13-15.58.

Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG. Primer3-new capabilities and interfaces. Nuc. Acids Res. 2012;40(15):e115.

Hendriks JHM, Kolbe A, Gibon Y, Stitt M, Geigenberger P. ADP-glucose pyrophosphorylase is activated by posttranslational redox-modification in response to light and to sugars in leaves of Arabidopsis and other plant species. Plant Physiol. 2003;133:838–49.

Jelitto T, Sonnewald U, Willmitzer L, Hajirezeai M, Stitt M. Inorganic pyrophosphate content and metabolites in potato and tobacco plants expressing E. coli pyrophosphatase in their cytosol. Planta. 1992;188:238–44.

Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES. TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics. 2007;23:2633–5.

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